View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3429_low_6 (Length: 266)
Name: NF3429_low_6
Description: NF3429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3429_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 38 - 250
Target Start/End: Complemental strand, 14331668 - 14331459
Alignment:
| Q |
38 |
atgaacatgctctaactctaaaaatatatatggtttgatcttaatgagcaacagaatgtcaaaagactactacaatgttttatatcatttaggaataatc |
137 |
Q |
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| T |
14331668 |
atgaacatgctctaactctaaaaatatatatggtttgatcttaatgagcaatagaatgtcaaaatactactacaatgtgttatatcatttgggaataatc |
14331569 |
T |
|
| Q |
138 |
atacatgaatataaagaaaatgtaaaagcataacattaggaattgaagnnnnnnnnnngagaagaacaaacttggtaagctgaagttgatacaccaaaca |
237 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14331568 |
atacatgaataaaaagaaaatgcaaaagcataacattaggaattgaa---caaaaagagagaagaacaaacttggtaagctgaagttgatacaccaaaca |
14331472 |
T |
|
| Q |
238 |
caaagtcggaaag |
250 |
Q |
| |
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||||||||||||| |
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| T |
14331471 |
caaagtcggaaag |
14331459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 38 - 250
Target Start/End: Complemental strand, 21725571 - 21725362
Alignment:
| Q |
38 |
atgaacatgctctaactctaaaaatatatatggtttgatcttaatgagcaacagaatgtcaaaagactactacaatgttttatatcatttaggaataatc |
137 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||| |
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| T |
21725571 |
atgaacatgctataactctaaaaatatatatggtttgatcttaatgagcaacataatgtcaaaatactactacaatgtgttatatcatttgggaataatc |
21725472 |
T |
|
| Q |
138 |
atacatgaatataaagaaaatgtaaaagcataacattaggaattgaagnnnnnnnnnngagaagaacaaacttggtaagctgaagttgatacaccaaaca |
237 |
Q |
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| T |
21725471 |
atacatgaatataaagaaaatgcaaaagcataacattaggaattgaa---aaaagagagagaagaacaaacttggtaagctgaagttgatacaccaaaca |
21725375 |
T |
|
| Q |
238 |
caaagtcggaaag |
250 |
Q |
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||||||||||||| |
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| T |
21725374 |
caaagtcggaaag |
21725362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 38 - 250
Target Start/End: Complemental strand, 21805296 - 21805087
Alignment:
| Q |
38 |
atgaacatgctctaactctaaaaatatatatggtttgatcttaatgagcaacagaatgtcaaaagactactacaatgttttatatcatttaggaataatc |
137 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||| |
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| T |
21805296 |
atgaacatgctataactctaaaaatatatatggtttgatcttaatgagcaacataatgtcaaaatactactacaatgtgttatatcatttgggaataatc |
21805197 |
T |
|
| Q |
138 |
atacatgaatataaagaaaatgtaaaagcataacattaggaattgaagnnnnnnnnnngagaagaacaaacttggtaagctgaagttgatacaccaaaca |
237 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21805196 |
atacatgaatataaagaaaatgcaaaagcataacattaggaattgaa---aaaagagagagaagaacaaacttggtaagctgaagttgatacaccaaaca |
21805100 |
T |
|
| Q |
238 |
caaagtcggaaag |
250 |
Q |
| |
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||||||||||||| |
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| T |
21805099 |
caaagtcggaaag |
21805087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 42 - 250
Target Start/End: Complemental strand, 9988700 - 9988495
Alignment:
| Q |
42 |
acatgctctaactctaaaaatatatatggtttgatcttaatgagcaacagaatgtcaaaagactactacaatgttttatatcatttaggaataatcatac |
141 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||| |
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| T |
9988700 |
acatgctctaactctaaaagtatatatggtttgatcttaatgagcaacagaatgtcaaaagtctagtacaatgtgttatatcatttgggaataatcatac |
9988601 |
T |
|
| Q |
142 |
atgaatataaagaaaatgtaaaagcataacattaggaattgaagnnnnnnnnnngagaagaacaaacttggtaagctgaagttgatacaccaaacacaaa |
241 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
9988600 |
atgaatataaagaaaatgcaaaagcataacattaggaattgaa---aaaaaagatagaagaacaaaattggtaagctgaagttgatacaacaaacacaaa |
9988504 |
T |
|
| Q |
242 |
gtcggaaag |
250 |
Q |
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|| |||||| |
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| T |
9988503 |
gttggaaag |
9988495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 59 - 244
Target Start/End: Original strand, 25330392 - 25330579
Alignment:
| Q |
59 |
aaatatatatggtttgatcttaatgagcaacagaatgtcaaaagactactacaatgttttatatcatttaggaataatcatacatgaatataaagaaaat |
158 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| |||||| |||| |||||||||||||||||||||||||||||| |
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| T |
25330392 |
aaatatatatggtttgatcttaatgagcaacagaatgtcaagagactaatagaatgtgttatattatttgggaataatcatacatgaatataaagaaaat |
25330491 |
T |
|
| Q |
159 |
gtaaaagcataacattaggaattg--aagnnnnnnnnnngagaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtc |
244 |
Q |
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| T |
25330492 |
gcaaaagcataacattaggaaatgaaaaaaaaacagagagagaagaacaaacttggtaagctgaagttgatacaccaaacacaaagtc |
25330579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 25325205 - 25325249
Alignment:
| Q |
199 |
aagaacaaacttggtaagctgaagttgatacaccaaacacaaagt |
243 |
Q |
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| T |
25325205 |
aagaacaaacttggtaagctgaagttgaagcaccaaacacaaagt |
25325249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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