View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3429_low_7 (Length: 262)
Name: NF3429_low_7
Description: NF3429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3429_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 3435481 - 3435390
Alignment:
| Q |
19 |
aaaagattcgttttggaaatgaagttggctcctttannnnnnnaatgttattaaaaaactaagtaaactttcatttcttagaacacacaaat |
110 |
Q |
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| T |
3435481 |
aaaagattcgttttggaaatgaagttggctcctttatttttttaatgttattaaaaaactaagtaaactttcatctcttagaacacacaaat |
3435390 |
T |
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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 3435304 - 3435249
Alignment:
| Q |
197 |
gttcgttaattttctatccccgtgaccaattacaagcattcaccataccccctatg |
252 |
Q |
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| T |
3435304 |
gttcgttaattttctatccccgtgaccaattataagcattcaccataccccctatg |
3435249 |
T |
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