View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3429_low_9 (Length: 240)
Name: NF3429_low_9
Description: NF3429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3429_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 31 - 224
Target Start/End: Complemental strand, 39674951 - 39674758
Alignment:
| Q |
31 |
gggtaactgaaataaatttaatagcatgcatggtaattcaattttattactaaactagattcggatgatacaattactgagttggagggatcggctgcaa |
130 |
Q |
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| T |
39674951 |
gggtaactgaaataaatttaatagcatgcatggtaattcaattttattactaaactagattcggatgatacaattacttagttggagggatcggctgcaa |
39674852 |
T |
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| Q |
131 |
ccaagtaactaatgaaacaagggattgatccagctacacataaacccttcctcaatgatgaatctcttctaaagaagaaaggaaagatcaccaa |
224 |
Q |
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| T |
39674851 |
ccaagtaagtaatgaaacaagggattgatccagctacacataaacccttcctcaataatgaatctcttctaaagaagaaaggaaagatcaccaa |
39674758 |
T |
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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 51044747 - 51044810
Alignment:
| Q |
137 |
aactaatgaaacaagggattgatccagctacacataaacccttcctcaatgatgaatctcttct |
200 |
Q |
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| T |
51044747 |
aactaatgaaacaagggattgatccagctacacataaacccttgatcaataatgaatctcttct |
51044810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 34626433 - 34626384
Alignment:
| Q |
137 |
aactaatgaaacaagggattgatccagctacacataaacccttcctcaat |
186 |
Q |
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| T |
34626433 |
aactaatgaaacaagggattgatccagctacacataaacccttcatcaat |
34626384 |
T |
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