View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_high_1 (Length: 559)
Name: NF3430_high_1
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_high_1 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 43519270 - 43519819
Alignment:
| Q |
1 |
ccctcaaagcaataattatcaatcaaattgattctaccaaatataaagtttatattttccttgggaattatcgatcaaatcgactcataatcgatcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43519270 |
ccctcaaagcaataattatcaatcaaattgattctaccaaatataaagtttatattttccttgggaattatcgatcaaatcgactcataatcgatcaatt |
43519369 |
T |
|
| Q |
101 |
agtgtaactttttaagatgccaccaccaaaggtagtaaaaataacaaaggtcttgctaacaagtgtgtgcgctcgggacacttgtgcttctctaagggtc |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43519370 |
agtgtaactttttaagatgccaccaccgaaggtagtaaaaataacagaggtcttgctaacaagtgtgtgcgctcgggacacttgtgcttctctaagggtc |
43519469 |
T |
|
| Q |
201 |
tcaccccattcactaccc-gtgacttctttactcaccaatacttgatactatcatgtgcaacaccataaccaaccacaataatagcatgttggttatgtt |
299 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43519470 |
tcaccccattcactaccccgtgatttctttactcaccaatacttgatactatcatgtgcaacaccataaccaaccacaataatagcatgttggttatgtt |
43519569 |
T |
|
| Q |
300 |
tcacgtttgtgattgtattccgtgtgaacaaaggtgacatgaaaaccacctttgaaatgaagaagctttgctagtttcagcattgggtttatgtgagctt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43519570 |
tcacgtttgtgattgtattccgtgtgaacaaaggtgacatgaaaaccacctttgaaatgaagaagctttgctagtttcagcattgggtttatgtgagctt |
43519669 |
T |
|
| Q |
400 |
gtgctggaaatggggaacattctttgagtttgtcttccccaacactaggtattttataggtgaaatgggacataaactgacgcatatttatttgcaacaa |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43519670 |
gtgctggaaatggggaacattctttgagtttgtcttccccaacactaggtattttataggtgaaatgggacataaactgacgcatatttatttgcaacaa |
43519769 |
T |
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| Q |
500 |
ctttgatgagttctttttcactattaacaggaactttctaatgccctttg |
549 |
Q |
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| T |
43519770 |
ctttgatgagttctttttcactattaacaggaactttctaatgccctttg |
43519819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 302 - 413
Target Start/End: Complemental strand, 89029 - 88918
Alignment:
| Q |
302 |
acgtttgtgattgtattccgtgtgaacaaaggtgacatgaaaaccacctttgaaatgaagaagctttgctagtttcagcattgggtttatgtgagcttgt |
401 |
Q |
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| T |
89029 |
acgtttgtgattgtattctgtgttaacaaaggtgacatgaaaaccacctttgaaatgaagaagttttgctatgttcagcattgggtttatgtgaccttgt |
88930 |
T |
|
| Q |
402 |
gctggaaatggg |
413 |
Q |
| |
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|||||| ||||| |
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| T |
88929 |
gctggatatggg |
88918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 472
Target Start/End: Complemental strand, 88804 - 88756
Alignment:
| Q |
424 |
tgagtttgtcttccccaacactaggtattttataggtgaaatgggacat |
472 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||| |||||| |
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| T |
88804 |
tgagtttgttttccacaacactaggtattttataggtgaaattggacat |
88756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 302 - 413
Target Start/End: Original strand, 26676450 - 26676561
Alignment:
| Q |
302 |
acgtttgtgattgtattccgtgtgaacaaaggtgacatgaaaaccacctttgaaatgaagaagctttgctagtttcagcattgggtttatgtgagcttgt |
401 |
Q |
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|||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||| ||||| |
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| T |
26676450 |
acgtttgtgattatattcagtgttaacaaaggtgacatgaaaaccacctttaaaatgaagaagttttgcaagtttgagcattggatttatgtgaccttgt |
26676549 |
T |
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| Q |
402 |
gctggaaatggg |
413 |
Q |
| |
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| T |
26676550 |
gctggaaatggg |
26676561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 302 - 413
Target Start/End: Original strand, 26948058 - 26948169
Alignment:
| Q |
302 |
acgtttgtgattgtattccgtgtgaacaaaggtgacatgaaaaccacctttgaaatgaagaagctttgctagtttcagcattgggtttatgtgagcttgt |
401 |
Q |
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|||||||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||| ||||| |
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| T |
26948058 |
acgtttgtgattatattcagtgttaacaaaggtgacatgaaaaccacctttaaaatgaagaagttttgcaagtttgagcattggatttatgtgaccttgt |
26948157 |
T |
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| Q |
402 |
gctggaaatggg |
413 |
Q |
| |
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|||||||||||| |
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| T |
26948158 |
gctggaaatggg |
26948169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 302 - 412
Target Start/End: Original strand, 26903638 - 26903748
Alignment:
| Q |
302 |
acgtttgtgattgtattccgtgtgaacaaaggtgacatgaaaaccacctttgaaatgaagaagctttgctagtttcagcattgggtttatgtgagcttgt |
401 |
Q |
| |
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|||||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| |||||||| ||||||||| ||||| |
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| T |
26903638 |
acgtttgtgattgtattcagtgttaacaaaggtgacatgaaaatcacttttgaaatgaagaagttttgcaagtttgagcattggatttatgtgaccttgt |
26903737 |
T |
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| Q |
402 |
gctggaaatgg |
412 |
Q |
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| T |
26903738 |
gctggaaatgg |
26903748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 37403591 - 37403641
Alignment:
| Q |
356 |
atgaagaagctttgctagtttcagcattgggtttatgtgagcttgtgctgg |
406 |
Q |
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|||||| || ||||||||||| |||||||||||||||||| |||||||||| |
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| T |
37403591 |
atgaaggagttttgctagttttagcattgggtttatgtgaccttgtgctgg |
37403641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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