View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_high_13 (Length: 288)
Name: NF3430_high_13
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 43411064 - 43411320
Alignment:
| Q |
1 |
ctcaatgcatagccatggactgtctgttgatgacaaaatacaccagaaaaattttcatatgtgtactcaagtaatctgcaccatttttatcaaacatatg |
100 |
Q |
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| T |
43411064 |
ctcaatgcatagccatggactgtctgttgatgacaaaatacaccagaaaatttttcatatgtgtactcaagtaatctgcaccatttttatcaaacatatg |
43411163 |
T |
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| Q |
101 |
tatagtagtagttagcaacatgattcagtgaaatttactgaaattttagtca-atttgataaatatgtatttatcgttcaatgacatgtcatatttttca |
199 |
Q |
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||||||||||||||||||||||||||||||| || |||| |||||||||||||||||| |||||||||||| ||||||||||||| | |
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| T |
43411164 |
tatagtagtagttagcaacatgattcagtgacat--------------gtcatatttgataaatatgtattcatcgttcaatgatatgtcatatttttta |
43411249 |
T |
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| Q |
200 |
taatattttctactgaataacaactaaatatgtcggaattaattttgatctatataaaagtaaaaccaaac |
270 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
43411250 |
taatattttctactaaataacaactaaatatgtcagaattaattttgatctatataaaagtgaaaccaaac |
43411320 |
T |
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