View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3430_high_2 (Length: 535)
Name: NF3430_high_2
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 20 - 522
Target Start/End: Original strand, 43939382 - 43939884
Alignment:
| Q |
20 |
tatatatattgccatacacaatggccatcagaatcatagaattatcattcccttttaagaccaaagtaaaatttaaaaataaccaaagggttcaaaagtg |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43939382 |
tatatatattgccatacactatggccatcagaatcattgaattatcattcccttttaagaccaaagtaaaatttaaaaataaccaaagggttcaaaagtg |
43939481 |
T |
|
| Q |
120 |
taatttagggatttagattagacgcggtaactctaagacttggccgtttgatttaaatctacggccaagatcagttaactatgaaactggctatgtaata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43939482 |
taatttagggatttagattagacgcggtaactctgagacttggccgtttgatttgaatctacggccaagatcagttaactatgaaactggctatgtaata |
43939581 |
T |
|
| Q |
220 |
taaacaatcctatctcaaatcaacgaacaaaatcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataag |
319 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43939582 |
taaacaatcctatctcaaatcaacgatcaaaatcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataag |
43939681 |
T |
|
| Q |
320 |
gaacatagacttttgttaataccgggcttctaacaatgattgaaggtttagcaccaaaattagccaaatctaaagcaatctccataccagaattaccaga |
419 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43939682 |
gaacatagaattttgttaataccgggcttctaacaatgattgaaggtttagcaccaaaattagccaaatctaaagcaatctccataccagaattaccaga |
43939781 |
T |
|
| Q |
420 |
accaacaacaagaacatgttcatctttaaactcttttccatttttgtacctagttgaatgaattactttccctttgaaattctccaacccttcaaccaca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43939782 |
accaacaacaagaacatgttcatctttaaactcttttccatttttgtacctagttgaatgaattactttccctttgaaattctccaacccttcaaccaca |
43939881 |
T |
|
| Q |
520 |
ggt |
522 |
Q |
| |
|
||| |
|
|
| T |
43939882 |
ggt |
43939884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 394 - 491
Target Start/End: Original strand, 43927847 - 43927944
Alignment:
| Q |
394 |
gcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctttaaactcttttccatttttgtacctagttgaatgaattactttccc |
491 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||||| |||||||| |
|
|
| T |
43927847 |
gcaatttccataccagaattcccagacccaacaacaagaacatgttcatctttaaactctttcccattcttaaacccagttgaatgaatcactttccc |
43927944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 32626961 - 32626905
Alignment:
| Q |
22 |
tatatattgccatacacaatggccatcagaatc-atagaattatcattcccttttaa |
77 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| || |||||||||||||||||||| |
|
|
| T |
32626961 |
tatatattgccatacattatggccatcagtatcaattgaattatcattcccttttaa |
32626905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 487
Target Start/End: Complemental strand, 15608285 - 15608185
Alignment:
| Q |
391 |
aaagcaatctccataccagaattaccagaaccaacaacaagaacatg----ttcatctttaaactcttttccatttttgtacctagttgaatgaattact |
486 |
Q |
| |
|
|||||| | ||||| |||||||| ||||| ||||||| ||||||||| |||||||||||||||||| |||| || ||| |||||||||||| ||| |
|
|
| T |
15608285 |
aaagcagtttccatgccagaattcccagatccaacaaaaagaacatgttaattcatctttaaactctttctcattcttaaacccagttgaatgaatcact |
15608186 |
T |
|
| Q |
487 |
t |
487 |
Q |
| |
|
| |
|
|
| T |
15608185 |
t |
15608185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 24489857 - 24489802
Alignment:
| Q |
22 |
tatatattgccatacacaatggccatcagaatc-atagaattatcattccctttta |
76 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
24489857 |
tatatattgccatacattatggccatcagtatcaattgaattatcattccctttta |
24489802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 24498191 - 24498136
Alignment:
| Q |
22 |
tatatattgccatacacaatggccatcagaatc-atagaattatcattccctttta |
76 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
24498191 |
tatatattgccatacattatggccatcagtatcaattgaattatcattccctttta |
24498136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 34290027 - 34290082
Alignment:
| Q |
22 |
tatatattgccatacacaatggccatcagaatc-atagaattatcattccctttta |
76 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
34290027 |
tatatattgccatacattatggccatcagtatcaattgaattatcattccctttta |
34290082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 34296661 - 34296716
Alignment:
| Q |
22 |
tatatattgccatacacaatggccatcagaatc-atagaattatcattccctttta |
76 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
34296661 |
tatatattgccatacattatggccatcagtatcaattgaattatcattccctttta |
34296716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University