View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_high_21 (Length: 250)
Name: NF3430_high_21
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_high_21 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 43568473 - 43568638
Alignment:
| Q |
91 |
ctatcagcatcatcatctccaattcaaacccaagacaacaagaatcactttcccttacaaaccaaaatgccaa------caacaaaaacaacccaaatcc |
184 |
Q |
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| T |
43568473 |
ctatcagcatcatcatctccaattcaaaccgaagacaacaagaatcactttcccttacaaaccaaaatgccaacaccaacaacaaaaacaacccaaatcc |
43568572 |
T |
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| Q |
185 |
caagaagacttcatcccattcaaagacgtaaaaacactagcgaaattcaaatcaagacacaactac |
250 |
Q |
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| T |
43568573 |
caagaagacttcatcccattcaaagacgtaaaaacactagcgaaattcaaatcaagacacaactac |
43568638 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 43568407 - 43568437
Alignment:
| Q |
19 |
aagaatgtggatggtcctatctccctctctt |
49 |
Q |
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| T |
43568407 |
aagaatgtggatggtcctatctccctctctt |
43568437 |
T |
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