View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_high_25 (Length: 241)
Name: NF3430_high_25
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 56 - 232
Target Start/End: Complemental strand, 22674188 - 22674012
Alignment:
| Q |
56 |
catctttaaaacgtttttaaaagtgtaattattctgctgcattctttctcaaaatttcatgagaaaatttcattgaagcaatcttcaacattttcctact |
155 |
Q |
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| T |
22674188 |
catctttaaaacgtttttaaaagtgtaattattctgctgcattctttctcaaaatttcatgagaaaatttcattgaagcaatctacaacattttcctact |
22674089 |
T |
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| Q |
156 |
ttgttttttccttgaagactcgctttttaaatccccaagaaataaatatttttatttcctttttcaatttctgatga |
232 |
Q |
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| T |
22674088 |
ttgtttcttccttgaagactccttttttaaatctccaagaaataaatattttcatttcctttttcaatttctaatga |
22674012 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 37865090 - 37865136
Alignment:
| Q |
115 |
tgagaaaatttcattgaagcaatcttcaacattttcctactttgttt |
161 |
Q |
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| T |
37865090 |
tgagaaaatttcattgaagcaatcttcgacctttttccactttgttt |
37865136 |
T |
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