View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3430_high_28 (Length: 236)

Name: NF3430_high_28
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3430_high_28
NF3430_high_28
[»] chr6 (7 HSPs)
chr6 (1-129)||(19996320-19996448)
chr6 (95-130)||(1605576-1605611)
chr6 (95-130)||(7761298-7761333)
chr6 (93-128)||(15064937-15064972)
chr6 (95-130)||(29260189-29260224)
chr6 (95-127)||(8626482-8626514)
chr6 (99-131)||(19087954-19087986)
[»] chr1 (14 HSPs)
chr1 (1-133)||(41959724-41959856)
chr1 (1-127)||(3943678-3943804)
chr1 (1-128)||(9589546-9589673)
chr1 (1-128)||(44227847-44227974)
chr1 (1-81)||(13984447-13984527)
chr1 (95-131)||(3943056-3943092)
chr1 (99-129)||(11641301-11641331)
chr1 (95-129)||(44228249-44228283)
chr1 (95-128)||(9588669-9588702)
chr1 (95-127)||(284333-284365)
chr1 (95-127)||(23045524-23045556)
chr1 (95-127)||(24772150-24772182)
chr1 (95-127)||(41959078-41959110)
chr1 (99-127)||(42735165-42735193)
[»] chr3 (12 HSPs)
chr3 (1-128)||(19912089-19912216)
chr3 (1-128)||(38806256-38806383)
chr3 (1-127)||(44276775-44276901)
chr3 (1-127)||(12095338-12095464)
chr3 (1-83)||(4227459-4227540)
chr3 (1-58)||(4236505-4236562)
chr3 (95-132)||(12094577-12094614)
chr3 (99-128)||(13499334-13499363)
chr3 (95-128)||(19241913-19241946)
chr3 (95-128)||(29375137-29375170)
chr3 (95-127)||(198855-198887)
chr3 (95-127)||(36881282-36881314)
[»] scaffold0257 (2 HSPs)
scaffold0257 (1-127)||(23787-23913)
scaffold0257 (95-127)||(23467-23499)
[»] chr5 (5 HSPs)
chr5 (1-131)||(15304818-15304948)
chr5 (95-127)||(12807098-12807130)
chr5 (95-127)||(15305233-15305265)
chr5 (95-127)||(25773649-25773681)
chr5 (95-127)||(30720737-30720769)
[»] chr7 (10 HSPs)
chr7 (1-129)||(2910857-2910985)
chr7 (1-121)||(25059456-25059576)
chr7 (95-133)||(2911569-2911607)
chr7 (95-127)||(47110451-47110483)
chr7 (95-130)||(10981505-10981540)
chr7 (95-128)||(25060154-25060187)
chr7 (95-128)||(27813810-27813843)
chr7 (99-127)||(20885337-20885365)
chr7 (99-127)||(41088587-41088615)
chr7 (99-127)||(46322199-46322227)
[»] chr8 (15 HSPs)
chr8 (1-128)||(41305761-41305888)
chr8 (1-116)||(45278023-45278138)
chr8 (1-81)||(10647209-10647289)
chr8 (95-130)||(8697919-8697954)
chr8 (95-129)||(40918974-40919008)
chr8 (95-129)||(41307982-41308016)
chr8 (95-127)||(3585451-3585483)
chr8 (95-127)||(20546532-20546564)
chr8 (95-127)||(27034997-27035029)
chr8 (95-127)||(36068080-36068112)
chr8 (95-127)||(37345571-37345603)
chr8 (96-128)||(40058549-40058581)
chr8 (95-127)||(40486474-40486506)
chr8 (95-127)||(43275642-43275674)
chr8 (95-127)||(45278722-45278754)
[»] chr2 (7 HSPs)
chr2 (8-127)||(34222058-34222177)
chr2 (126-185)||(44551750-44551809)
chr2 (95-128)||(3518907-3518940)
chr2 (95-128)||(12969984-12970017)
chr2 (95-127)||(1102503-1102535)
chr2 (95-127)||(34224399-34224431)
chr2 (99-127)||(39358401-39358429)
[»] chr4 (10 HSPs)
chr4 (1-116)||(19362104-19362219)
chr4 (1-85)||(20543402-20543486)
chr4 (95-135)||(12071553-12071593)
chr4 (95-137)||(21661780-21661822)
chr4 (95-137)||(21670544-21670586)
chr4 (95-128)||(14261043-14261076)
chr4 (95-128)||(21310424-21310457)
chr4 (95-128)||(25704650-25704683)
chr4 (95-128)||(40122730-40122763)
chr4 (95-127)||(34324828-34324860)
[»] scaffold0056 (1 HSPs)
scaffold0056 (99-127)||(70961-70989)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 19996448 - 19996320
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  19996448 tagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatg 19996349  T
Q  101 gacatgtattttgaaatggagggagtata 129  Q
    |||||||||||||||| ||||||||||||    
T  19996348 gacatgtattttgaaacggagggagtata 19996320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 1605611 - 1605576
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtataa 130  Q
    |||||||||||||||||||||| |||||||||||||    
T  1605611 aaaatggacatgtattttgaaacggagggagtataa 1605576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 7761333 - 7761298
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtataa 130  Q
    |||||||||||||||||||||| |||||||||||||    
T  7761333 aaaatggacatgtattttgaaacggagggagtataa 7761298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 15064937 - 15064972
Alignment:
Q  93 ctaaaatggacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||||||||||| |||||||||||    
T  15064937 ctaaaatggacatgtattttgaaacggagggagtat 15064972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 29260224 - 29260189
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtataa 130  Q
    |||||||||||||||||||||| |||||||||||||    
T  29260224 aaaatggacatgtattttgaaacggagggagtataa 29260189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 8626514 - 8626482
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  8626514 aaaatggacatgtattttgaaacggagggagta 8626482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 19087986 - 19087954
Alignment:
Q  99 tggacatgtattttgaaatggagggagtataat 131  Q
    |||||||||||||||||| ||||||||||||||    
T  19087986 tggacatgtattttgaaacggagggagtataat 19087954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 41959724 - 41959856
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  41959724 tagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatg 41959823  T
Q  101 gacatgtattttgaaatggagggagtataatta 133  Q
    |||||||||||||||| ||||||||||| ||||    
T  41959824 gacatgtattttgaaacggagggagtattatta 41959856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 3943678 - 3943804
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  3943678 tagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatg 3943777  T
Q  101 gacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||| ||||||||||    
T  3943778 gacatgtattttgaaacggagggagta 3943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 9589546 - 9589673
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||       |||||||     
T  9589546 tagaattcaattaattggtagacaagggtaaaatagacaaaatgcatacttaaactatgaaatggatatgtattttgaaacaaaaaatttctctaaaata 9589645  T
Q  101 gacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||| |||||||||||    
T  9589646 gacatgtattttgaaacggagggagtat 9589673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 44227974 - 44227847
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||||       | ||||||    
T  44227974 tagaatccaattagttggtatacaagggtaaaatagacaaaatgtatccttaaactatcaaaatgacatgcattttgaaacaaaaaatttctccaaaatg 44227875  T
Q  101 gacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||| |||||||||||    
T  44227874 gacatgtattttgaaacggagggagtat 44227847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 13984527 - 13984447
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaac 81  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  13984527 tagaatccaattaattggtagacaagggtaaaatagacaacatgtatccttaaactatgaaatggatatgtattttgaaac 13984447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 3943092 - 3943056
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtataat 131  Q
    |||||||||||||||||||||| ||||||||||||||    
T  3943092 aaaatggacatgtattttgaaacggagggagtataat 3943056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 11641301 - 11641331
Alignment:
Q  99 tggacatgtattttgaaatggagggagtata 129  Q
    |||||||||||||||||||||||||||||||    
T  11641301 tggacatgtattttgaaatggagggagtata 11641331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 44228249 - 44228283
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtata 129  Q
    |||||||||||||||||||||||||||| ||||||    
T  44228249 aaaatggacatgtattttgaaatggaggtagtata 44228283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 9588702 - 9588669
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||||||||| |||||||||||    
T  9588702 aaaatggacatgtattttgaaacggagggagtat 9588669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 284365 - 284333
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  284365 aaaatggacatgtattttgaaacggagggagta 284333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 23045524 - 23045556
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  23045524 aaaatggacatgtattttgaaacggagggagta 23045556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 24772150 - 24772182
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  24772150 aaaatggacatgtattttgaaacggagggagta 24772182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 41959110 - 41959078
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  41959110 aaaatggacatgtattttgaaacggagggagta 41959078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 42735193 - 42735165
Alignment:
Q  99 tggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||||||||||    
T  42735193 tggacatgtattttgaaatggagggagta 42735165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 19912089 - 19912216
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  19912089 tagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatg 19912188  T
Q  101 gacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||| |||||||||||    
T  19912189 gacatgtattttgaaacggagggagtat 19912216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 38806256 - 38806383
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       ||||||||    
T  38806256 tagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatagacatgtattttgaaacaaaaaatttctctaaaatg 38806355  T
Q  101 gacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||| |||||||||||    
T  38806356 gacatgtattttgaaacggagggagtat 38806383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 44276901 - 44276775
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  44276901 tagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatg 44276802  T
Q  101 gacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||| |||| |||||    
T  44276801 gacatgtattttgaaacggagagagta 44276775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 12095338 - 12095464
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  12095338 tagaatccaattaattggtagacaagggtaaaatagataaaatgcatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatg 12095437  T
Q  101 gacatgtattttgaaatggagggagta 127  Q
    ||||| |||||||||| ||||||||||    
T  12095438 gacatatattttgaaacggagggagta 12095464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 4227459 - 4227540
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaa 83  Q
    |||||||||||||| || ||| ||||||||||||| |||||||||||||||||| ||| |||   ||||||||||| ||||||    
T  4227459 tagaatccaattaattg-taggcaagggtaaaatatacaaaatgtatccttaaattatcaaaaatacatgtatttttaaacaa 4227540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4236505 - 4236562
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactat 58  Q
    |||||||||||||| ||  || ||||||||||||| | ||||||||||||||||||||    
T  4236505 tagaatccaattaattgcaaggcaagggtaaaatatataaaatgtatccttaaactat 4236562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 12094614 - 12094577
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtataatt 132  Q
    |||||||||||||||||||||| |||||||||||||||    
T  12094614 aaaatggacatgtattttgaaacggagggagtataatt 12094577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 128
Target Start/End: Complemental strand, 13499363 - 13499334
Alignment:
Q  99 tggacatgtattttgaaatggagggagtat 128  Q
    ||||||||||||||||||||||||||||||    
T  13499363 tggacatgtattttgaaatggagggagtat 13499334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 19241913 - 19241946
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||||||||| |||||||||||    
T  19241913 aaaatggacatgtattttgaaacggagggagtat 19241946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 29375170 - 29375137
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||||||||| |||||||||||    
T  29375170 aaaatggacatgtattttgaaacggagggagtat 29375137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 198887 - 198855
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  198887 aaaatggacatgtattttgaaacggagggagta 198855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 36881314 - 36881282
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  36881314 aaaatggacatgtattttgaaacggagggagta 36881282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 23787 - 23913
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  23787 tagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatg 23886  T
Q  101 gacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||| ||| ||||||    
T  23887 gacatgtattttgaaacggatggagta 23913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 23499 - 23467
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  23499 aaaatggacatgtattttgaaacggagggagta 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 15304948 - 15304818
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  15304948 tagaatccaattaattggtagataagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatg 15304849  T
Q  101 gacatgtattttgaaatggagggagtataat 131  Q
    |||||||||||| ||| ||||||||||||||    
T  15304848 gacatgtattttaaaacggagggagtataat 15304818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 12807098 - 12807130
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  12807098 aaaatggacatgtattttgaaacggagggagta 12807130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 15305233 - 15305265
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  15305233 aaaatggacatgtattttgaaacggagggagta 15305265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 25773681 - 25773649
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  25773681 aaaatggacatgtattttgaaacggagggagta 25773649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 30720737 - 30720769
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  30720737 aaaatggacatgtattttgaaacggagggagta 30720769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 2910985 - 2910857
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||     
T  2910985 tagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctttaaaata 2910886  T
Q  101 gacatgtattttgaaatggagggagtata 129  Q
    |||||||||||||||| ||||||||||||    
T  2910885 gacatgtattttgaaacggagggagtata 2910857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 25059576 - 25059456
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  25059576 tagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatg 25059477  T
Q  101 gacatgtattttgaaatggag 121  Q
    |||||||||||||||| ||||    
T  25059476 gacatgtattttgaaacggag 25059456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 2911569 - 2911607
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtataatta 133  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2911569 aaaatggacatgtattttgaaatggagggagtataatta 2911607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 47110483 - 47110451
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||||||||||||||    
T  47110483 aaaatggacatgtattttgaaatggagggagta 47110451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 10981540 - 10981505
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtataa 130  Q
    |||||||||||||||||||||| |||||||||||||    
T  10981540 aaaatggacatgtattttgaaacggagggagtataa 10981505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 25060154 - 25060187
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||||||||| |||||||||||    
T  25060154 aaaatggacatgtattttgaaacggagggagtat 25060187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 27813843 - 27813810
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||||||||| |||||||||||    
T  27813843 aaaatggacatgtattttgaaacggagggagtat 27813810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 20885337 - 20885365
Alignment:
Q  99 tggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||||||||||    
T  20885337 tggacatgtattttgaaatggagggagta 20885365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 41088615 - 41088587
Alignment:
Q  99 tggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||||||||||    
T  41088615 tggacatgtattttgaaatggagggagta 41088587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 46322199 - 46322227
Alignment:
Q  99 tggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||||||||||    
T  46322199 tggacatgtattttgaaatggagggagta 46322227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 41305888 - 41305761
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  41305888 tagaatccaattaattggtagacaagggtaaaatagacaaaatatatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatg 41305789  T
Q  101 gacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||| |||| ||||||    
T  41305788 gacatgtattttgaaacggagagagtat 41305761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 45278138 - 45278023
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  45278138 tagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaaaatttctctaaaatg 45278039  T
Q  101 gacatgtattttgaaa 116  Q
    ||||||||||||||||    
T  45278038 gacatgtattttgaaa 45278023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 10647209 - 10647289
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaac 81  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10647209 tagaatccaattaattggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaac 10647289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 8697919 - 8697954
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtataa 130  Q
    |||||||||||||||||||||| |||||||||||||    
T  8697919 aaaatggacatgtattttgaaacggagggagtataa 8697954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 40918974 - 40919008
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtata 129  Q
    |||||||||||||||||||||| ||||||||||||    
T  40918974 aaaatggacatgtattttgaaacggagggagtata 40919008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 41307982 - 41308016
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtata 129  Q
    |||||||||||||||||||||| ||||||||||||    
T  41307982 aaaatggacatgtattttgaaacggagggagtata 41308016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 3585483 - 3585451
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  3585483 aaaatggacatgtattttgaaacggagggagta 3585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 20546532 - 20546564
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    ||||||||||| |||||||||||||||||||||    
T  20546532 aaaatggacatatattttgaaatggagggagta 20546564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 27035029 - 27034997
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  27035029 aaaatggacatgtattttgaaacggagggagta 27034997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 36068112 - 36068080
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  36068112 aaaatggacatgtattttgaaacggagggagta 36068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 37345603 - 37345571
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  37345603 aaaatggacatgtattttgaaacggagggagta 37345571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 40058549 - 40058581
Alignment:
Q  96 aaatggacatgtattttgaaatggagggagtat 128  Q
    ||||||||||||||||||||| |||||||||||    
T  40058549 aaatggacatgtattttgaaacggagggagtat 40058581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 40486474 - 40486506
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  40486474 aaaatggacatgtattttgaaacggagggagta 40486506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 43275642 - 43275674
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  43275642 aaaatggacatgtattttgaaacggagggagta 43275674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 45278722 - 45278754
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  45278722 aaaatggacatgtattttgaaacggagggagta 45278754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 34222177 - 34222058
Alignment:
Q  8 caattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatggacatgt 107  Q
    ||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||    
T  34222177 caattaattgatagacaagggtaaaatagacaaaatgtatccttaaattatgaaatggacatgtattttgaaacaaaaaatttctataaaatggacatgt 34222078  T
Q  108 attttgaaatggagggagta 127  Q
    ||||| ||| ||| ||||||    
T  34222077 attttaaaacggaaggagta 34222058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 44551750 - 44551809
Alignment:
Q  126 tataattatttacataacgcataaataataatgtatgacctagtcgtgatttaattaatg 185  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44551750 tataattatttacgtaacgcataaataataatgtatgacctagtcgtgatttaattaatg 44551809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 3518940 - 3518907
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||||||||| |||||||||||    
T  3518940 aaaatggacatgtattttgaaacggagggagtat 3518907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 12969984 - 12970017
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||||||||| |||||||||||    
T  12969984 aaaatggacatgtattttgaaacggagggagtat 12970017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 1102535 - 1102503
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  1102535 aaaatggacatgtattttgaaacggagggagta 1102503  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 34224399 - 34224431
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  34224399 aaaatggacatgtattttgaaacggagggagta 34224431  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 39358401 - 39358429
Alignment:
Q  99 tggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||||||||||    
T  39358401 tggacatgtattttgaaatggagggagta 39358429  T

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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 19362104 - 19362219
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaannnnnnnctaaaatg 100  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||  ||||||||||||  |||||||       ||||||||    
T  19362104 tagaatccaattaattggtagacaatggtaaaatagacaaaatgtatccttaaactatcaaaatgacatgtattttacaacaaaaaatttctctaaaatg 19362203  T
Q  101 gacatgtattttgaaa 116  Q
    ||||||||||||||||    
T  19362204 gacatgtattttgaaa 19362219  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 20543402 - 20543486
Alignment:
Q  1 tagaatccaattaagtggtagacaagggtaaaatagacaaaatgtatccttaaactatgaaatggacatgtattttgaaacaaaa 85  Q
    |||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  20543402 tagaatccaattaattggtaggcaagggtagaatagacaaaatgtatccttaaactatcaaaatgacatgtattttgaaacaaaa 20543486  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 12071593 - 12071553
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtataattatt 135  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  12071593 aaaatggacatgtattttgaaacggagggagtatcattatt 12071553  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 21661780 - 21661822
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtataattattta 137  Q
    |||||||||||||||||||||| ||||||||||| ||| ||||    
T  21661780 aaaatggacatgtattttgaaagggagggagtattattcttta 21661822  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 21670544 - 21670586
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtataattattta 137  Q
    |||||||||||||||||||||| ||||||||||| ||| ||||    
T  21670544 aaaatggacatgtattttgaaagggagggagtattattcttta 21670586  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 14261076 - 14261043
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||||||||| |||||||||||    
T  14261076 aaaatggacatgtattttgaaacggagggagtat 14261043  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 21310457 - 21310424
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||||||||| |||||||||||    
T  21310457 aaaatggacatgtattttgaaacggagggagtat 21310424  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 25704683 - 25704650
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||||||||| |||||||||||    
T  25704683 aaaatggacatgtattttgaaacggagggagtat 25704650  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 40122730 - 40122763
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagtat 128  Q
    |||||||||||||||||||||| |||||||||||    
T  40122730 aaaatggacatgtattttgaaacggagggagtat 40122763  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 34324828 - 34324860
Alignment:
Q  95 aaaatggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||| ||||||||||    
T  34324828 aaaatggacatgtattttgaaacggagggagta 34324860  T

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Target: scaffold0056 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 70989 - 70961
Alignment:
Q  99 tggacatgtattttgaaatggagggagta 127  Q
    |||||||||||||||||||||||||||||    
T  70989 tggacatgtattttgaaatggagggagta 70961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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