View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_high_29 (Length: 232)
Name: NF3430_high_29
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 29579129 - 29578916
Alignment:
| Q |
1 |
atcaagtacatgaggaaactgaaattgataagaaaatgataaaaaactaaaatattccaaatcaatttcgtcatcagagcatgtaacttttgttgatctt |
100 |
Q |
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| T |
29579129 |
atcaagtacatgaggaaactgaaattgataagaaaatgataaaaaactaaaatattccaaatcaatttcgtcatcagagcatgtaacttttgttgatctt |
29579030 |
T |
|
| Q |
101 |
tcaagctccttcataaagtccataaacacatgtttctttttgcactactttgtctccaagagtcggtatggaactaacactgttatccttcattacttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29579029 |
tcaagctccttcataaagtccataaacacatgtttctttttgcactactttgtctccaagagtcgatatggaactaacactgttatccttcattacttaa |
29578930 |
T |
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| Q |
201 |
ctcatgctgtaaat |
214 |
Q |
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|||||||||||||| |
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| T |
29578929 |
ctcatgctgtaaat |
29578916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 29583174 - 29583101
Alignment:
| Q |
142 |
gcactactttgtctccaagagtcggtatggaactaacactgttatccttcattacttaactcatgctgtaaatg |
215 |
Q |
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|||||| ||||||||||||| || | || |||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
29583174 |
gcactattttgtctccaagactcagaatagaaccaacactgttatccttcattacttaactcatgttgtaaatg |
29583101 |
T |
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