View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_high_3 (Length: 526)
Name: NF3430_high_3
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 508
Target Start/End: Complemental strand, 41208981 - 41208503
Alignment:
| Q |
11 |
cacagactgatcacaataaagaataaaacatcgatctccattgaaattgaaggtacaccatcaacaatgtactatgtggtccccaatgtataactcaagt |
110 |
Q |
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| T |
41208981 |
cacagactgatcacaataaagaacaaaacatcgatctccattgaaattgaaggtacaccatcaacaatgtactatgtggtccctaatgtataactcaagt |
41208882 |
T |
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| Q |
111 |
ggtttattcaggacacctgaaggagtttgagaatgaggttcctgattcaaaccctgactactaaccaataaattttggctatnnnnnnnntgtactatgt |
210 |
Q |
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| T |
41208881 |
ggtttattcaggacacctgaaggagtttgagaatgaggttccggattcaaaccctgactactaaccactaaattttggctataaaaaaaatgtactatgt |
41208782 |
T |
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| Q |
211 |
gatacagaaacttgttcaagattaataataatgtgattatatatttgattaaatattccatgattggtaagaaaacaggatcagaatgacaatcaaattg |
310 |
Q |
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| T |
41208781 |
gatacagaaacttgttcaagattaataataatgcgattatatatttgattaaatattccatgattggtaagaaaacaggatcagaatgacaatcaaattg |
41208682 |
T |
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| Q |
311 |
aaggtcaaataaattaggggtccttatcttatacatttgtgtgatacagtgttaaagaatttcaatgacaaaaggaacaaaaccaagaatttgtaaaata |
410 |
Q |
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| T |
41208681 |
aaggtcaaataaattaggggtccttatcttatacatttgtgtgatacagtgttaaagaatttcaatgacaaaaggaacaaaaccaagaatttgtaaaata |
41208582 |
T |
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| Q |
411 |
gatatgaaattgaaaaccaagaaaaccaagaaatagatacacattcatcatagcaaacaatgatgcatcaacaaaaccaagaaatataccgtcgatct |
508 |
Q |
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| T |
41208581 |
gatatgaaattgaaaacca-------------------acacattcatcatagcaaacaatgatgcatcaacaaaaccaagaaatataccgttgatct |
41208503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 41198954 - 41198868
Alignment:
| Q |
64 |
tacaccatcaacaatgtactatgtggtccccaatgtataactcaagtggtttattcaggacacctgaaggagtttgagaatgaggtt |
150 |
Q |
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| T |
41198954 |
tacaccatcaacaatgtacgatgtagtccccaaggcgtaacttaagtggttaattcaggatacccttgggagtttcagaatgaggtt |
41198868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 486
Target Start/End: Complemental strand, 41198634 - 41198597
Alignment:
| Q |
449 |
acacattcatcatagcaaacaatgatgcatcaacaaaa |
486 |
Q |
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| T |
41198634 |
acacattcatcatagcaaacaatgattcatcagcaaaa |
41198597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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