View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3430_high_5 (Length: 448)
Name: NF3430_high_5
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 5750382 - 5750008
Alignment:
| Q |
1 |
aactaaagagatagatttgaaggccagcaggactaacatagaatcagtctctaaccaaaaattaaaccagcctttactatgagcaatctcaatagcctgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5750382 |
aactaaagagatagatttgaaggccagcatgactaacatagaatcagtctctaaccaaaaattaaaccagcctttactatgagcaatctcaatagcctgc |
5750283 |
T |
|
| Q |
101 |
atggctcctgataattcagcaaataaagaggatcctaaacccaagttttgagcaaaacaacctatacattcagcttcgttgtttctgaagataccaccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5750282 |
atggctcctgataattcagcaaataaagaggatcctaaacccaagttttgagcaaaacaacctatacattcagcttcgttgtttctgaagataccaccac |
5750183 |
T |
|
| Q |
201 |
acacaaccttcgatggaataccaccggctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgc |
300 |
Q |
| |
|
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5750182 |
acgcagccttcgatggaataccatcggctgcaccatctgtgttacatttaatccagtcaaatataggtggatgccataagacttcaatgatctttggtgc |
5750083 |
T |
|
| Q |
301 |
cttaggaggatgaatagcaatattaaaagttttaaaaatactaaactcagttatactattacaagcagctttgct |
375 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5750082 |
cttaggtggatgaatagcaatattaaaagttttacgaatactaaactcagttatactattacaagcagctttgct |
5750008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 3 - 375
Target Start/End: Original strand, 19408776 - 19409148
Alignment:
| Q |
3 |
ctaaagagatagatttgaaggccagcaggactaacatagaatcagtctctaaccaaaaattaaaccagcctttactatgagcaatctcaatagcctgcat |
102 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| | | ||| |
|
|
| T |
19408776 |
ctaaagagatagatttgaaggccaacaagactaacatagaattagtctctaaccaaaaattaaactagcctttactatgagcaatctcaataccttccat |
19408875 |
T |
|
| Q |
103 |
ggctcctgataattcagcaaataaagaggatcctaaacccaagttttgagcaaaacaacctatacattcagcttcgttgtttctgaagataccaccacac |
202 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
19408876 |
ggctcttgataactcagcaaataatgaggatcctaaacccaagttttgagcaaaacaacctatatattcagcttcgttgtttctgaagataccaccacgc |
19408975 |
T |
|
| Q |
203 |
acaaccttcgatggaataccaccggctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgcct |
302 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||| ||||| || |||||||| |||||||||||| | ||||||| |||||| ||||| |||| |
|
|
| T |
19408976 |
gcagttttcgatggaataccaccggctgcaccatctatgttgcattttatacagtcaaatataggtggatgcgagaagacttaaatgatttttggggcct |
19409075 |
T |
|
| Q |
303 |
taggaggatgaatagcaatattaaaagttttaaaaatactaaactcagttatactattacaagcagctttgct |
375 |
Q |
| |
|
|||| || ||||||| |||||||||||||||| |||||||| |||| ||||| ||||||||||| |||||| |
|
|
| T |
19409076 |
tagggggttgaatagaaatattaaaagttttatgaatactaatctcaattatagaattacaagcagatttgct |
19409148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 45676676 - 45676302
Alignment:
| Q |
1 |
aactaaagagatagatttgaaggccagcaggactaacatagaatcagtctctaaccaaaaattaaaccagcctttactatgagcaatctcaatagcctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45676676 |
aactaaagagatagatttgaaggccagcaggactaacatagaatcagtctctaaccaaaaattaaaccagcctttactatgagcaatctcaatagcctgc |
45676577 |
T |
|
| Q |
101 |
atggctcctgataattcagcaaataaagaggatcctaaacccaagttttgagcaaaacaacctatacattcagcttcgttgtttctgaagataccaccac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45676576 |
atggctcctgataattcagcaaataaagaggatcctaaacccaagttttaagcaaaacaacctatacattcagcttcgttgtttcttaagataccaccac |
45676477 |
T |
|
| Q |
201 |
acacaaccttcgatggaataccaccggctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgc |
300 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45676476 |
acgcagccttcgatggaataccaccggctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttagtgc |
45676377 |
T |
|
| Q |
301 |
cttaggaggatgaatagcaatattaaaagttttaaaaatactaaactcagttatactattacaagcagctttgct |
375 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45676376 |
cttaggtggatgaatagcaatattaaaagttttaagaatactaaactcagttatactattacaagaagctttgct |
45676302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 17873457 - 17873549
Alignment:
| Q |
33 |
ctaacatagaatcagtctctaaccaaaaattaaaccagcctttactatgagcaatctcaatagcctgcatggctcctgataattcagcaaata |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17873457 |
ctaacatagaatcagtctctaaccaaaaattaaaccagcctttactatgaacaatcttaatagcctgcatggctcctgataattcagcaaata |
17873549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 35095948 - 35096063
Alignment:
| Q |
41 |
gaatcagtctctaaccaaaaattaaaccagcctttactatgagcaatctcaatagcctgcatggctcctgataattcagcaaataaagaggatcctaaac |
140 |
Q |
| |
|
|||||||| |||||||| | |||| |||||||||| | | ||| |||||||| || | ||| ||||| ||||||| |||||||||||| || || |||| |
|
|
| T |
35095948 |
gaatcagtttctaaccatagattagtccagcctttattgtaagctatctcaattgcattcatagctcccgataattaagcaaataaagatgaaccaaaac |
35096047 |
T |
|
| Q |
141 |
ccaagttttgagcaaa |
156 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
35096048 |
acaagttctgagcaaa |
35096063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 31162366 - 31162660
Alignment:
| Q |
1 |
aactaaagagatagatttgaaggccagcaggactaacatagaatcagtctctaaccaaaaattaaaccagcctttactatgagcaatctcaatagcctgc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||| |
|
|
| T |
31162366 |
aactaaagagatagatttgaagtccagcaggactaatatataatatgtctctaaccaaaaattaaatcagccttcactgtgagcaatctcaatagcttgc |
31162465 |
T |
|
| Q |
101 |
atggctcctgataattcagcaaataaagaggatcctaaacccaagttttgagcaaaacaacctatacattcagcttcgttgtttctgaagataccaccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31162466 |
atggctcctgataattcagcaaataaagaggatcttaaatccaagttttgatcaaaacaacctatacattcagcttcgttgtttatgaagataccaccac |
31162565 |
T |
|
| Q |
201 |
acacaaccttcgatggaataccaccggctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttg |
296 |
Q |
| |
|
||||| |||| |||||||||||||||||| |||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
31162566 |
acacatcctttgatggaataccaccggctagaccatctgtg-tgcatttaatccagtcaaaaataggtggatgccataagacttcaatgagctttg |
31162660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 29450942 - 29451006
Alignment:
| Q |
371 |
ttgctatcctatttagtgcttaactaacgcttgctgatccttgctacttggccacggttcatcct |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29450942 |
ttgctatcctatttagtgcttaactaacgcttgttgatccttgctacttggccacggttcatcct |
29451006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 46 - 194
Target Start/End: Complemental strand, 35295892 - 35295744
Alignment:
| Q |
46 |
agtctctaaccaaaaattaaaccagcctttactatgagcaatctcaatagcctgcatggctcctgataattcagcaaataaagaggatcctaaacccaag |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35295892 |
agtctctaaccaaaaattaaaccagcctttactatgagcaatctcaatagcctgcatggctcctgataattcagcaaataaagaggatcctaaacccaag |
35295793 |
T |
|
| Q |
146 |
ttttgagcaaaacaacctatacattcagcttcgttgtttctgaagatac |
194 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35295792 |
ttttgagcaaaacaacccatacattcagcttcgttgtttctgaagatac |
35295744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 218 - 375
Target Start/End: Complemental strand, 35295747 - 35295590
Alignment:
| Q |
218 |
ataccaccggctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgccttaggaggatgaatag |
317 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
35295747 |
atacaaccggttgcaccatctgtgttacatttaatccagtcaaaaataggtggaagccataagacttcaatgatctttggggccttaggtggatgaatag |
35295648 |
T |
|
| Q |
318 |
caatattaaaagttttaaaaatactaaactcagttatactattacaagcagctttgct |
375 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
35295647 |
caatattaaaagttttaagaatactaaactcaattatagaattacaagcagctttgct |
35295590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 189
Target Start/End: Complemental strand, 20692611 - 20692487
Alignment:
| Q |
65 |
aaccagcctttactatgagcaatctcaatagcctgcatggctcctgataattcagcaaataaagaggatcctaaacccaagttttgagcaaaacaaccta |
164 |
Q |
| |
|
||||||||||| | || || ||||||||||||||||| || ||||||||||||||||||||||| || ||| ||| || || |||||||| ||||||| |
|
|
| T |
20692611 |
aaccagcctttgttgtgtgctatctcaatagcctgcatagcacctgataattcagcaaataaagatgaacctggacctaaattctgagcaaagcaaccta |
20692512 |
T |
|
| Q |
165 |
tacattcagcttcgttgtttctgaa |
189 |
Q |
| |
|
|||| |||||| | ||||||||| |
|
|
| T |
20692511 |
tacaaagagcttcttggtttctgaa |
20692487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 15606633 - 15606723
Alignment:
| Q |
227 |
gctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgccttaggaggatgaatag |
317 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| | ||||| || ||| | || ||||| ||||||||||||| |
|
|
| T |
15606633 |
gctgctccatctgtgttgcatttaatccaatcaaaaataggaggatgccagacaacttctattatcatgggagcctttggaggatgaatag |
15606723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 2209492 - 2209431
Alignment:
| Q |
140 |
cccaagttttgagcaaaacaacctatacattcagcttcgttgtttctgaagataccaccaca |
201 |
Q |
| |
|
||||||||||||||||| |||| || |||||| |||| ||||| ||||||||||| ||||| |
|
|
| T |
2209492 |
cccaagttttgagcaaagcaactcatgcattcaccttccttgttcctgaagatacctccaca |
2209431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 303
Target Start/End: Complemental strand, 19131588 - 19131512
Alignment:
| Q |
227 |
gctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgcctt |
303 |
Q |
| |
|
||||| || ||||| |||||||||||||| |||||||| || || ||||| | |||||||| |||||||| ||||| |
|
|
| T |
19131588 |
gctgctccgtctgtattacatttaatccaatcaaagatgggcgggtgccaaagaacttcaattatctttggagcctt |
19131512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 315
Target Start/End: Original strand, 26631909 - 26631997
Alignment:
| Q |
227 |
gctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgccttaggaggatgaat |
315 |
Q |
| |
|
|||| |||||||||||| ||||||||||| | ||||||| | ||||||||||||||||||||||| |||| | || ||||||||||| |
|
|
| T |
26631909 |
gctgaaccatctgtgttgcatttaatccattgaaagataaggggatgccataagacttcaatgattcttggagttttgggaggatgaat |
26631997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 7803826 - 7803916
Alignment:
| Q |
227 |
gctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgccttaggaggatgaatag |
317 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| | ||||| | ||| | || ||||| ||||||||||||| |
|
|
| T |
7803826 |
gctgctccatctgtgttgcatttaatccaatcaaatataggaggatgccagacaacttcttttatcatgggagcctttggaggatgaatag |
7803916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 14245042 - 14245132
Alignment:
| Q |
227 |
gctgcaccatctgtgttacatttaatccagtcaaagataggtggatgccataagacttcaatgatctttggtgccttaggaggatgaatag |
317 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || ||||| | ||||| || || || || || || ||||||||||||| |
|
|
| T |
14245042 |
gctgcaccatctgtgttgcatttaatccagtcaaagataggagggtgccagacaacttctattattttgggagcttttggaggatgaatag |
14245132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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