View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3430_high_6 (Length: 418)

Name: NF3430_high_6
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3430_high_6
NF3430_high_6
[»] chr2 (4 HSPs)
chr2 (17-404)||(16237153-16237540)
chr2 (308-404)||(32407607-32407700)
chr2 (56-124)||(161025-161093)
chr2 (17-48)||(32714168-32714199)
[»] chr7 (2 HSPs)
chr7 (17-404)||(28574904-28575291)
chr7 (208-339)||(38658234-38658365)
[»] chr3 (4 HSPs)
chr3 (17-404)||(20633096-20633483)
chr3 (18-404)||(48823127-48823513)
chr3 (338-404)||(11692054-11692118)
chr3 (332-400)||(17525854-17525922)
[»] chr1 (4 HSPs)
chr1 (127-402)||(38833196-38833471)
chr1 (199-404)||(18185400-18185605)
chr1 (17-123)||(38835871-38835977)
chr1 (366-404)||(29752384-29752422)
[»] chr6 (1 HSPs)
chr6 (17-404)||(18568588-18568975)
[»] chr5 (1 HSPs)
chr5 (199-404)||(39180666-39180871)
[»] chr4 (2 HSPs)
chr4 (302-404)||(36123864-36123966)
chr4 (352-404)||(24323551-24323603)
[»] chr8 (2 HSPs)
chr8 (204-336)||(14137690-14137822)
chr8 (181-234)||(5699423-5699476)


Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 16237153 - 16237540
Alignment:
Q  17 gagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcgtgtaaggatggtagcatcgcggggtgtgga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16237153 gagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcgtgtaaggatggtagtatcgcggggtgtgga 16237252  T
Q  117 ggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16237253 ggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaag 16237352  T
Q  217 gtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaaggaaagcaatgc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16237353 gtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaaggaaagcaatgc 16237452  T
Q  317 gaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16237453 gaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaat 16237540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 308 - 404
Target Start/End: Original strand, 32407607 - 32407700
Alignment:
Q  308 aagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaat 404  Q
    |||||||||||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  32407607 aagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaa---cttcaaatggaatgggaagtgaaggttaaacactcgtattgtgaaacaaat 32407700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 161025 - 161093
Alignment:
Q  56 tgggtgggtcaagatcaatactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttat 124  Q
    ||||||||||||||| ||||||||||  |  | |||||||| ||| |||||||||||||||||||||||    
T  161025 tgggtgggtcaagattaatactgacgatgtttataaggatgatagtatcgcggggtgtggaggacttat 161093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 32714199 - 32714168
Alignment:
Q  17 gagacatttggaggaagtgggatggaaggaac 48  Q
    ||||||||||||||||||||||||||||||||    
T  32714199 gagacatttggaggaagtgggatggaaggaac 32714168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Complemental strand, 28575291 - 28574904
Alignment:
Q  17 gagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcgtgtaaggatggtagcatcgcggggtgtgga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28575291 gagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcgtgtaaggatggtagtatcgcggggtgtgga 28575192  T
Q  117 ggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28575191 ggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaag 28575092  T
Q  217 gtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaaggaaagcaatgc 316  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28575091 gtctccgatgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaaggaaagcaatgc 28574992  T
Q  317 gaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28574991 gaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaat 28574904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 208 - 339
Target Start/End: Complemental strand, 38658365 - 38658234
Alignment:
Q  208 ttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaagga 307  Q
    |||||||||||||||||||||||||||| |||||||| |  ||||| |||||| | ||||||| | |||| || ||||| || |||| ||  ||||||||    
T  38658365 ttttggaaggtctccggtgtgcgaaacgaatggggtttatagcagttgaattacaagtggattttttggttgtggtgaacataattatgaaggggaagga 38658266  T
Q  308 aagcaatgcgaggggtaggagtcttgttcaaa 339  Q
     | |||| |||  || ||||||||||||||||    
T  38658265 tatcaattcgattggaaggagtcttgttcaaa 38658234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Complemental strand, 20633483 - 20633096
Alignment:
Q  17 gagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcgtgtaaggatggtagcatcgcggggtgtgga 116  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  20633483 gagacatttggaggaagtgggatggaaggaaccagcgattaggtgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgcggggtgtgga 20633384  T
Q  117 ggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaag 216  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20633383 ggacttatcagaggttcggaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaag 20633284  T
Q  217 gtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaaggaaagcaatgc 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||    
T  20633283 gtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacgagtgagagggaaagcaatgc 20633184  T
Q  317 gaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaat 404  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20633183 gagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatggaaagtgaaggttaaacactcgtatcgtgaagcaaat 20633096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 48823513 - 48823127
Alignment:
Q  18 agacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcgtgtaaggatggtagcatcgcggggtgtggag 117  Q
    |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  48823513 agacatttagaggaagtgggatggaaggaaccagcgattggatgggtcaagatcaatactgacggagcttgtaaggatggtagtatcgcggggtgtggag 48823414  T
Q  118 gacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaagg 217  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48823413 gacttatcagaggttcggaaggcgagtggttagcggggttctccaaatttttagggaagagtgatgcttttattgcagagctatggggagttttggaagg 48823314  T
Q  218 tctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaaggaaagcaatgcg 317  Q
    |||||||||||| |||||||  |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  48823313 tctccggtgtgcaaaacgtacagggttcactgcagtagaattaaatatggattctttggtggttgtgaatattattacgagtgggggggaaagcaatgcg 48823214  T
Q  318 aggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaat 404  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48823213 agtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaat 48823127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 404
Target Start/End: Complemental strand, 11692118 - 11692054
Alignment:
Q  338 aaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaat 404  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  11692118 aaaaattagaaaacttcttcaaatggaatgggaattgaaggttaaaca--cgtatcgtgaagcaaat 11692054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 400
Target Start/End: Complemental strand, 17525922 - 17525854
Alignment:
Q  332 tgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagc 400  Q
    |||| ||||||||||  |||||||| ||||| | ||||||||||||||  |||| || |||||||||||    
T  17525922 tgttaaaaaaattaggcaacttctttaaatgaagtgggaagtgaaggtccaacattcttatcgtgaagc 17525854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 127 - 402
Target Start/End: Complemental strand, 38833471 - 38833196
Alignment:
Q  127 gaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtg 226  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38833471 gaggttcggaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtg 38833372  T
Q  227 tgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtagg 326  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38833371 tgcaaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacgagtgggaaggaaagcaatgcgagtggtagg 38833272  T
Q  327 agtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaa 402  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38833271 agttttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacattcgtatcgtgaagcaa 38833196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 199 - 404
Target Start/End: Original strand, 18185400 - 18185605
Alignment:
Q  199 tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgag 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  18185400 tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacaag 18185499  T
Q  299 tgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaa 398  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||| |||||||||||    
T  18185500 tgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaaattctttagatggaataggaagtgaaggttaaacacccgtatcgtgaa 18185599  T
Q  399 gcaaat 404  Q
    ||||||    
T  18185600 gcaaat 18185605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 38835977 - 38835871
Alignment:
Q  17 gagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcgtgtaaggatggtagcatcgcggggtgtgga 116  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||    
T  38835977 gagacatttggaggaagtgggatggaaggaaccactgattgcgtgggtcaagatcaatactaacgaagcttgtaaggatggtagtatcgcggggtgtgga 38835878  T
Q  117 ggactta 123  Q
    |||||||    
T  38835877 ggactta 38835871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 366 - 404
Target Start/End: Complemental strand, 29752422 - 29752384
Alignment:
Q  366 tgggaagtgaaggttaaacactcgtatcgtgaagcaaat 404  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29752422 tgggaagtgaaggttaaacactcgtatcgtgaagcaaat 29752384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 18568588 - 18568975
Alignment:
Q  17 gagacatttggaggaagtgggatggaaggaaccaccgattgggtgggtcaagatcaatactgacggagcgtgtaaggatggtagcatcgcggg-gtgtgg 115  Q
    ||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| |||  || |||||||||||||  || ||||| | ||||    
T  18568588 gagacatttggcggaagtgggatggaaggtaccaccaattgggtgggtcaagatcaatactaacgatgcttgtaaggatggtaatattgcgggagcgtgg 18568687  T
Q  116 aggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaa 215  Q
    | | |||||  |||||| | ||||||| ||||||| |||||||| ||||||||| |||||||||   |||||| |||| |||||||||| ||||||||||    
T  18568688 atggcttattagaggtttgaaaggcgaatggttagtggggttcttcaaatttttggggaagtgtagcgcttttgttgcggagctatgggaagttttggaa 18568787  T
Q  216 ggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaaggaaagcaatg 315  Q
    |||||| | ||||| |||| ||||||||||||||||||| | ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  18568788 ggtctc-gatgtgcaaaacatatggggttcactgcagtatacttaaatgtggattctttggtggttataaatattattacgagtgggaaggaaagcaatg 18568886  T
Q  316 cgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaat 404  Q
    | || |||| |||||||||||||||||||||| |||||||||||||||||  ||||||||| ||||||||||||||||||||| |||||    
T  18568887 caagtggtatgagtcttgttcaaaaaattagacaacttcttcaaatggaacaggaagtgaaagttaaacactcgtatcgtgaaacaaat 18568975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 199 - 404
Target Start/End: Original strand, 39180666 - 39180871
Alignment:
Q  199 tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgag 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39180666 tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacgag 39180765  T
Q  299 tgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaa 398  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39180766 tgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaa 39180865  T
Q  399 gcaaat 404  Q
    ||||||    
T  39180866 gcaaat 39180871  T

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Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 302 - 404
Target Start/End: Complemental strand, 36123966 - 36123864
Alignment:
Q  302 gaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagca 401  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  36123966 gaaggaaagcaattcgagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatggaaagtgaaggttaaacactcatatcgtaaagca 36123867  T
Q  402 aat 404  Q
    |||    
T  36123866 aat 36123864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 352 - 404
Target Start/End: Complemental strand, 24323603 - 24323551
Alignment:
Q  352 ttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaat 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24323603 ttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaat 24323551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 336
Target Start/End: Original strand, 14137690 - 14137822
Alignment:
Q  204 ggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtggga 303  Q
    |||||||||||||||||||||||||| | | |  |  ||||||||| | |||||||| ||||||||| | || | || ||||||||||||| |||  ||     
T  14137690 ggagttttggaaggtctccggtgtgcaagaagattaaggttcactgtaatagaattatatgtggattttttgatcgtggtgaatattattatgaggaggc 14137789  T
Q  304 aggaaagcaatgcgaggggtaggagtcttgttc 336  Q
    |||| || |||||||| |||||||| |||||||    
T  14137790 aggagagtaatgcgagtggtaggagccttgttc 14137822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 5699423 - 5699476
Alignment:
Q  181 atgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaac 234  Q
    |||||||||| || ||| | ||||||||||||||||||||||| | ||||||||    
T  5699423 atgcttttatagcggagttgtggggagttttggaaggtctccgatatgcgaaac 5699476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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