View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_high_8 (Length: 358)
Name: NF3430_high_8
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 37650162 - 37649827
Alignment:
| Q |
17 |
ttgttttggatcaccagtttcagatctggacaacggaatgaactctattatgaagcggagattgaagtcatgagagctaacgaatccaacaccatgttca |
116 |
Q |
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| T |
37650162 |
ttgttttggatcaccagtttcagatctggacaacggaatgaactctattatgaagcggagattgaagtcatgagagctaacgaatccaacaccatgttca |
37650063 |
T |
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| Q |
117 |
ttgatttcgaacatgttattagattcagcgatgttcttcagaaagctatctctgatgaatatttgaggta-----nnnnnnnnnncatttagatttttat |
211 |
Q |
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| T |
37650062 |
ttgatttcgaacatgttattagattcagcgatgttcttcagaaagctatctctgatgaatatttgaggtatttttttttttttttcatttagatttttat |
37649963 |
T |
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| Q |
212 |
tgaaattacggtaaccttaatatttggtattatcttgggatactgataattgtttttgtgttgttgatgataggtttgaaccttacttgcagaatgcctg |
311 |
Q |
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| T |
37649962 |
tgaaattaccgtaaccttaatatttggtattatcttgggatactgataattgtttttgtgttgttgatgataggtttgaaccttacttgcagaatgcctg |
37649863 |
T |
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| Q |
312 |
caaaaggtttgttatggagcttaagccgacgttcat |
347 |
Q |
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| T |
37649862 |
caaaaggtttgttatggagcttaagccgacgttcat |
37649827 |
T |
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