View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_low_11 (Length: 297)
Name: NF3430_low_11
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 25540449 - 25540730
Alignment:
| Q |
1 |
tgagtaatcagctaacgcatcagtaaccaatttcactgaggaacgttacttgttccatctatcaaatttaccattatatagaacagctcctagagttgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540449 |
tgagtaatcagctaacgcatcagtaaccaatttcactgaggaacgttacttgttccatctatcaaatttaccattatatagaacagctcctagagttgca |
25540548 |
T |
|
| Q |
101 |
tttgttgcgagcactcgaatcctcaaagctaaaggactactaacttgatacagtgttgcttctaacaacatagttgtatatgaaaggtacatgttcggta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25540549 |
tttgttgcgagcactcgaatcctcaaagctaaaggactactaacttgatacagtgttgcttctaacaacatagttgtatatgaaaggtacatgttaggta |
25540648 |
T |
|
| Q |
201 |
aatgaatgtgttcttaggaaactcgatgcatttgaaagtaaaccaagtatgtgtacgtttcatatgcaactgtgttatcttt |
282 |
Q |
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| T |
25540649 |
aatgaatgtgttcttaggaaactcgatgcatttgaaagtaaaccaagtatgtgtacgtttcatatgcaactgtgttatcttt |
25540730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 25517184 - 25517048
Alignment:
| Q |
1 |
tgagtaatcagctaacgcatcagtaaccaatttcactgaggaacgttacttgttccatctatcaaatttaccattatatagaacagctcctagagttgca |
100 |
Q |
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||||||||||||||||| ||||| | ||||||||||||||||||||||| | |||||||||||| ||||||||||| | | ||||||||||||||||||| |
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| T |
25517184 |
tgagtaatcagctaacgtatcagcagccaatttcactgaggaacgttacctattccatctatcatatttaccattaaaaa-aacagctcctagagttgca |
25517086 |
T |
|
| Q |
101 |
tttgttgcgagcactcgaatcctcaaagctaaaggact |
138 |
Q |
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| T |
25517085 |
tttgttgcgagcactcgaatcctcaaagccaaaggact |
25517048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 25534070 - 25534161
Alignment:
| Q |
157 |
tgcttctaacaacatagttgtatatgaaaggtacatgttcggtaaatgaatgtgttcttaggaaactcgatgcatttgaaagtaaaccaagta |
249 |
Q |
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| T |
25534070 |
tgcttctaacaacatatttgtatat-aaaggtacatattcagtagctgaatgtgttcttaggaatctcgatgcatttgaaagtaaaccaagta |
25534161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 25524916 - 25525049
Alignment:
| Q |
3 |
agtaatcagctaacgcatcagtaaccaatttcactgaggaacgttacttgttccatctatcaaatttaccattatatagaacagctcctagagttgcatt |
102 |
Q |
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||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||| ||| | | | ||| ||||||||||||||||| |
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| T |
25524916 |
agtaatcagtcaacgcatcatcaaccaatttcactgaggaatgttacctgttccatctatcatattaaaaa------aaaacggctcctagagttgcatt |
25525009 |
T |
|
| Q |
103 |
tgttgcgagcactcgaatcctcaaagctaaaggactacta |
142 |
Q |
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|||||||||||||| |||| ||||||| |||||||||||| |
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| T |
25525010 |
tgttgcgagcactcaaatcgtcaaagccaaaggactacta |
25525049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 25516359 - 25516252
Alignment:
| Q |
142 |
aacttgatacagtgttgcttctaacaacatagttgtatatgaaaggtacatgttcggtaaatgaatgtgttcttaggaaactcgatgcatttgaaagtaa |
241 |
Q |
| |
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|||| |||||| ||| | ||||||| |||||||||||| ||| |||| ||||||| ||| || ||||||||||||||| |||||||||||||||||||| |
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| T |
25516359 |
aactagatacaatgtagattctaactacatagttgtatctgacaggtgcatgttcagtagctggatgtgttcttaggaacctcgatgcatttgaaagtaa |
25516260 |
T |
|
| Q |
242 |
accaagta |
249 |
Q |
| |
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|||||||| |
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| T |
25516259 |
accaagta |
25516252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 25526068 - 25526153
Alignment:
| Q |
157 |
tgcttctaacaacatagttgtatatgaaaggtacatgttcggtaaatgaatgtgttcttaggaaactcgatgcatttgaaagtaaac |
243 |
Q |
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| T |
25526068 |
tgcttctaacgacatatttgtatatgaa-ggtacatattcagtagctgaatgtgttcttaggaatctcgatgcatttgaaagtaaac |
25526153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 44461024 - 44461068
Alignment:
| Q |
84 |
cagctcctagagttgcatttgttgcgagcactcgaatcctcaaag |
128 |
Q |
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||||| ||||||||||||||||||| ||||||| ||||||||||| |
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| T |
44461024 |
cagctgctagagttgcatttgttgcaagcactccaatcctcaaag |
44461068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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