View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3430_low_12 (Length: 296)

Name: NF3430_low_12
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3430_low_12
NF3430_low_12
[»] chr3 (8 HSPs)
chr3 (1-279)||(45909986-45910247)
chr3 (3-115)||(20993581-20993693)
chr3 (63-138)||(45880802-45880877)
chr3 (63-138)||(45855761-45855836)
chr3 (2-115)||(20980437-20980550)
chr3 (102-141)||(2995315-2995354)
chr3 (245-276)||(45869858-45869889)
chr3 (231-275)||(45855929-45855973)
[»] chr5 (3 HSPs)
chr5 (44-200)||(7975730-7975886)
chr5 (79-137)||(38141044-38141102)
chr5 (79-131)||(7895931-7895983)
[»] chr7 (1 HSPs)
chr7 (4-129)||(44500145-44500270)
[»] chr4 (3 HSPs)
chr4 (79-276)||(3979400-3979597)
chr4 (44-131)||(36590331-36590418)
chr4 (61-131)||(20272898-20272970)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 45909986 - 45910247
Alignment:
Q  1 gaaaaacaaaccaattataaatctcttgctttaagagtttgcgttgagcaatctacgaaatcaacttctgctgatggcgaattttgaagcaagaagtcct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  45909986 gaaaaacaaaccaattataaatctcttgctttaagagtttgcgttgagcaatctacgaaatcaacttctgctgatggcgaatttcgaagcaagaagtcca 45910085  T
Q  101 atattccatcaggtatgagtgaagatggttcaaatccttctacaaaatcttttcgtaacttagcagcttttgtctttaacttaagtttctgtaacttgac 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||                 |||||| |||||| ||||||||||||||     
T  45910086 atattccatcaggtatgagtgaagatggttccaatccttctacaaaatcttttc-----------------gtctttgacttaactttctgtaacttgaa 45910168  T
Q  201 ttcacacagtgccatgcgaattttatacagaagtggttccattaccactttcaatgacttcaagttacccaaggaaagt 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45910169 ttcacacagtgccatgcgaattttatacagaagtggttccattaccactttcaatgacttcaagttacccaaggaaagt 45910247  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 20993581 - 20993693
Alignment:
Q  3 aaaacaaaccaattataaatctcttgctttaagagtttgcgttgagcaatctacgaaatcaacttctgctgatggcgaattttgaagcaagaagtcctat 102  Q
    |||||||||||||||||||| ||||| | ||| || ||   ||| |||||||||||| ||||||||||| || |||||||||||| |||||||||||  |    
T  20993581 aaaacaaaccaattataaatgtcttggtctaacaggttttcttgtgcaatctacgaagtcaacttctgccgagggcgaattttgacgcaagaagtccact 20993680  T
Q  103 attccatcaggta 115  Q
    || ||||||||||    
T  20993681 atcccatcaggta 20993693  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 45880802 - 45880877
Alignment:
Q  63 aacttctgctgatggcgaattttgaagcaagaagtcctatattccatcaggtatgagtgaagatggttcaaatcct 138  Q
    ||||| ||| |||||||||||||||||||||||||    |||||||||||||||| ||| ||||||||| ||||||    
T  45880802 aacttgtgccgatggcgaattttgaagcaagaagttaattattccatcaggtatgggtgcagatggttccaatcct 45880877  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 45855761 - 45855836
Alignment:
Q  63 aacttctgctgatggcgaattttgaagcaagaagtcctatattccatcaggtatgagtgaagatggttcaaatcct 138  Q
    ||||| ||| |||||||||||||||||||||||||    ||||||||| |||||| ||| ||||||||| ||||||    
T  45855761 aacttgtgccgatggcgaattttgaagcaagaagttaattattccatcgggtatgggtgcagatggttccaatcct 45855836  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 20980437 - 20980550
Alignment:
Q  2 aaaaacaaaccaattataaatctcttgctttaagagtttgcgttgagcaatctacgaaatcaacttctgctgatggcgaattttgaagcaagaagtccta 101  Q
    ||||| ||||||||||||||| | ||| | ||| || ||   ||| |||||||| ||| ||||||| |||||  |||||||||||| |||||||||||      
T  20980437 aaaaataaaccaattataaatgttttggtctaacagatttttttgtgcaatctatgaagtcaacttttgctgtgggcgaattttgacgcaagaagtccac 20980536  T
Q  102 tattccatcaggta 115  Q
    ||| ||||||||||    
T  20980537 tatcccatcaggta 20980550  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 2995315 - 2995354
Alignment:
Q  102 tattccatcaggtatgagtgaagatggttcaaatccttct 141  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  2995315 tattccatcaggtatgagtgaaaatggttccaatccttct 2995354  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 245 - 276
Target Start/End: Original strand, 45869858 - 45869889
Alignment:
Q  245 ccactttcaatgacttcaagttacccaaggaa 276  Q
    ||||||||||||||||||||||||||||||||    
T  45869858 ccactttcaatgacttcaagttacccaaggaa 45869889  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 45855929 - 45855973
Alignment:
Q  231 aagtggttccattaccactttcaatgacttcaagttacccaagga 275  Q
    |||||||||| ||  |||||||||||||||||||||||| |||||    
T  45855929 aagtggttcccttttcactttcaatgacttcaagttacctaagga 45855973  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 7975730 - 7975886
Alignment:
Q  44 ttgagcaatctacgaaatcaacttctgctgatggcgaattttgaagcaagaagtcctatattccatcaggtatgagtgaagatggttcaaatccttctac 143  Q
    ||||| |||||| | | ||||||| ||| || || |||||||||||||||||||||  |||||||||||||||||||||||||||||  ||||| |||      
T  7975730 ttgagaaatctatgtagtcaacttttgccgaaggtgaattttgaagcaagaagtccactattccatcaggtatgagtgaagatggtttcaatccatctct 7975829  T
Q  144 aaaatcttttcgtaacttagcagcttttgtctttaacttaagtttctgtaacttgac 200  Q
    |||  ||||||||||||||||||||| | ||||| |||| | |||||||||| ||||    
T  7975830 aaatgcttttcgtaacttagcagcttctttctttgacttgattttctgtaacatgac 7975886  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 38141044 - 38141102
Alignment:
Q  79 gaattttgaagcaagaagtcctatattccatcaggtatgagtgaagatggttcaaatcc 137  Q
    |||||||||| ||||||||||  |||||||||||||||| ||| ||||||||| |||||    
T  38141044 gaattttgaatcaagaagtccactattccatcaggtatgggtgcagatggttccaatcc 38141102  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 7895983 - 7895931
Alignment:
Q  79 gaattttgaagcaagaagtcctatattccatcaggtatgagtgaagatggttc 131  Q
    ||||||||||||||||| |||  |||||||||||||||| ||| |||||||||    
T  7895983 gaattttgaagcaagaaatccactattccatcaggtatgggtgcagatggttc 7895931  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 44500145 - 44500270
Alignment:
Q  4 aaacaaaccaattataaatctcttgctttaagagtttgcgttgagcaatctacgaaatcaacttctgctgatggcgaattttgaagcaagaagtcctata 103  Q
    ||||||||| ||||||||| |||  ||| ||||| | || |||||| ||| | ||| |||||||||||  |||| |||||||||||||||||||||  ||    
T  44500145 aaacaaaccgattataaatatctctcttaaagaggtcgccttgagcgatcgatgaagtcaacttctgccaatggtgaattttgaagcaagaagtccacta 44500244  T
Q  104 ttccatcaggtatgagtgaagatggt 129  Q
    ||| ||||||||   |||||||||||    
T  44500245 ttctatcaggtacaggtgaagatggt 44500270  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 276
Target Start/End: Complemental strand, 3979597 - 3979400
Alignment:
Q  79 gaattttgaagcaagaagtcctatattccatcaggtatgagtgaagatggttcaaatccttctacaaaatcttttcgtaacttagcagcttttgtcttta 178  Q
    |||||||||  ||||||||||  |||||||||||||| | |||||| |||||| || ||||||  |||  ||||||||| | ||||||||| | |||||     
T  3979597 gaattttgacacaagaagtccactattccatcaggtacgggtgaaggtggttccaacccttctttaaatgcttttcgtatcctagcagcttctctctttg 3979498  T
Q  179 acttaagtttctgtaacttgacttcacacagtgccatgcgaattttatacagaagtggttccattaccactttcaatgacttcaagttacccaaggaa 276  Q
    | ||    |||||||||||||  || |  |||| |||||||| |  ||||| ||||  |||||||  ||||||||||||||||||||||  |||||||    
T  3979497 atttggcgttctgtaacttgatatcccttagtgtcatgcgaaatccatacaaaagttcttccattctcactttcaatgacttcaagttatgcaaggaa 3979400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 36590331 - 36590418
Alignment:
Q  44 ttgagcaatctacgaaatcaacttctgctgatggcgaattttgaagcaagaagtcctatattccatcaggtatgagtgaagatggttc 131  Q
    |||||| ||||| ||  |||||||||||||| || || ||||||| ||| ||||||  |||||||||||||||| |||||||||||||    
T  36590331 ttgagctatctatgatgtcaacttctgctgacggtgagttttgaatcaaaaagtccactattccatcaggtatgggtgaagatggttc 36590418  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 20272898 - 20272970
Alignment:
Q  61 tcaacttctgctgatggcgaattttgaagcaagaagtcc--tatattccatcaggtatgagtgaagatggttc 131  Q
    ||||||||||  |||||||||||||||||||| ||||||   |||||||||  ||||||| ||||||||||||    
T  20272898 tcaacttctgtcgatggcgaattttgaagcaaaaagtccataatattccatttggtatgactgaagatggttc 20272970  T

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