View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_low_15 (Length: 277)
Name: NF3430_low_15
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 25540265 - 25539996
Alignment:
| Q |
1 |
actcttggtataagcactctttttgtatgaagggcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatagggctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540265 |
actcttggtataagcactctttttgtatgaagggcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatagggctgt |
25540166 |
T |
|
| Q |
101 |
ttgggtgagagtatcacaagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaatttgggcttatgcagttcctcggct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25540165 |
ttgggtgagagtatcacaagagcttatgagctcccataagttgtttgtcataagctctcttaacaagcttatgaatttgggcttatgcagttcctcggct |
25540066 |
T |
|
| Q |
201 |
tatgaccctaaccgcaaacctctttgtcatatcgctagtgctgttcctctcgtcgtacccctctctgctc |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25540065 |
tatgaccctaaccgcaaacctctttgtcatatcgctagtgctgttcctctcgtcgtacccctctttgctc |
25539996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 25517328 - 25517494
Alignment:
| Q |
1 |
actcttggtataagcactctttttgtatgaagggcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatagggctgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |
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| T |
25517328 |
actcttggtataagcactctttttgtatgaagggcctatttggattgactagttttgggcgtatg------------gtatatgcactttatagaggtgt |
25517415 |
T |
|
| Q |
101 |
ttgggtgagagtatcacaagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaatttg |
179 |
Q |
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| T |
25517416 |
ttgggtgagagtatcacaagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaatttg |
25517494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 25524680 - 25524598
Alignment:
| Q |
12 |
aagcactctttttgtatgaagggcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatag |
94 |
Q |
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||||||||| |||||||||| ||||| |||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
25524680 |
aagcactctgtttgtatgaaaggcctctttggatttactaattttgggagtatctgggctcttttggtatatgcactttatag |
25524598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 25517537 - 25517584
Alignment:
| Q |
226 |
gtcatatcgctagtgctgttcctctcgtcgtacccctctctgctcctc |
273 |
Q |
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| T |
25517537 |
gtcatatccctagtgctgttcctctcttcatacccctctttgctcctc |
25517584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 27122674 - 27122733
Alignment:
| Q |
127 |
tgagctcccataagttgtttgtcataagctctcctaacaagcttatgaatttgggcttat |
186 |
Q |
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| T |
27122674 |
tgagctcccataagctgtttttcataagctcccctaacaagcttataaacttgggcttat |
27122733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 24023997 - 24024055
Alignment:
| Q |
118 |
aagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaat |
176 |
Q |
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||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||| |
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| T |
24023997 |
aagagcttatgagctcccataagctgttttcaacgagctctcctaataagcttatgaat |
24024055 |
T |
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