View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_low_17 (Length: 263)
Name: NF3430_low_17
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 14749036 - 14748804
Alignment:
| Q |
13 |
gagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaagatgttagtg |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14749036 |
gagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaagatgttagtg |
14748937 |
T |
|
| Q |
113 |
aggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccggagaaact |
212 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14748936 |
aggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccggagaaact |
14748837 |
T |
|
| Q |
213 |
aaaaattcggcaaagagtggtggaggaccagaa |
245 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
14748836 |
aaaaattcggcaaagagtggtggaggaccagaa |
14748804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 14764085 - 14763886
Alignment:
| Q |
13 |
gagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaagatgttagtg |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
14764085 |
gagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgggtaaagatgttagcg |
14763986 |
T |
|
| Q |
113 |
aggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccggagaaact |
212 |
Q |
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||||||| ||||| ||||||||||| ||| || || |||||||||||| |||||||||||||||| ||| | |||||||||||||||| ||||||||| |
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| T |
14763985 |
aggatgacacattctatgttaatgacagatttagcagtaaactgtataagataaaaataggaactgttgttgcacaaaaggaatcggaactggagaaact |
14763886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 17621140 - 17620926
Alignment:
| Q |
16 |
attccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaagatgttagtgagg |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |
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| T |
17621140 |
attccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtcctgaggaaggagcctacgagtaaagatgttagcgagg |
17621041 |
T |
|
| Q |
116 |
atgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccggagaaactaaa |
215 |
Q |
| |
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|||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
17621040 |
atgacgcattctatgttaatgacaagttcagtagcaaactgtataagataaaaataggaactgtagttactcaaaaggaatctgaaccggagaaactaaa |
17620941 |
T |
|
| Q |
216 |
aattcggcaaagagt |
230 |
Q |
| |
|
|| ||| |||||||| |
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|
| T |
17620940 |
aactcgacaaagagt |
17620926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 17564514 - 17564713
Alignment:
| Q |
13 |
gagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaagatgttagtg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
17564514 |
gagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgggtaaagatgttagcg |
17564613 |
T |
|
| Q |
113 |
aggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccggagaaact |
212 |
Q |
| |
|
||||||| ||||| ||||||||||| ||| || || |||||||||||| |||||||||||||||| ||| | |||||||||||||||| ||||||||| |
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|
| T |
17564614 |
aggatgacacattctatgttaatgacagatttagcagtaaactgtataagataaaaataggaactgttgttgcacaaaaggaatcggaactggagaaact |
17564713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 15194525 - 15194321
Alignment:
| Q |
13 |
gagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaagatgttagtg |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||| ||||||||| |
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| T |
15194525 |
gagattccagcttcagatttgaagatgtgcctgcaatctttggctttggttaagggtaaaaatgtcctaaggaaggagcctatgaataattatgttagtg |
15194426 |
T |
|
| Q |
113 |
aggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccggagaaact |
212 |
Q |
| |
|
|| |||||||||| ||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||| || ||| |||| | |||||||||||||| |
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|
| T |
15194425 |
agattgatgcattctttgttaatgacaagttcagtagaaaattgtataaggtaaaaataggaagtgtagttgctgaaacggaacctgaaccggagaaact |
15194326 |
T |
|
| Q |
213 |
aaaaa |
217 |
Q |
| |
|
|||| |
|
|
| T |
15194325 |
gaaaa |
15194321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 15205210 - 15205006
Alignment:
| Q |
13 |
gagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaagatgttagtg |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||||||| ||||||||||||||| ||| ||||||||| |
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|
| T |
15205210 |
gagattccagcttcagatttgaagatgtgcctgcaatctttggctttggttaagggtaaagatgtcctacggaaggagcctatgaataattatgttagtg |
15205111 |
T |
|
| Q |
113 |
aggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccggagaaact |
212 |
Q |
| |
|
|| |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| || ||| |||| | |||||||||||||| |
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|
| T |
15205110 |
agattgatgcattctttgttaatgacaagttcagtagcaaattgtataaggtaaaaataggaagtgtagttgctgaaacggaacctgaaccggagaaact |
15205011 |
T |
|
| Q |
213 |
aaaaa |
217 |
Q |
| |
|
|||| |
|
|
| T |
15205010 |
gaaaa |
15205006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 15214943 - 15214739
Alignment:
| Q |
13 |
gagattccagcttcagatttgaagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaagatgttagtg |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | ||||||| ||||||||||||||| ||| ||||||||| |
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|
| T |
15214943 |
gagattccagcttcagatttgaagatgtgcctgcaatctttggctttggttaagggtaaatatgtcctatggaaggagcctatgaataattatgttagtg |
15214844 |
T |
|
| Q |
113 |
aggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccggagaaact |
212 |
Q |
| |
|
|| |||||||||| ||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||| || ||| |||| | |||||||||||||| |
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|
| T |
15214843 |
agattgatgcattctttgttaatgacaagttcagtagtaaattgtataaggtaaaaataggaagtgtagttgctgaaacggaacctgaaccggagaaact |
15214744 |
T |
|
| Q |
213 |
aaaaa |
217 |
Q |
| |
|
|||| |
|
|
| T |
15214743 |
gaaaa |
15214739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 34 - 240
Target Start/End: Complemental strand, 24394484 - 24394278
Alignment:
| Q |
34 |
aagaggtgcctgcaatctttggctttggttaagggaagaaatgtccttaggaaggagcctatgagtaaagatgttagtgaggatgatgcattcattgtta |
133 |
Q |
| |
|
||||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| ||| ||| | |
|
|
| T |
24394484 |
aagagatgtctgcaatcattggctttagttaagggaagaaatgtccttagaaaggagccgatgagtaaagatgttggtgaggatgatgctttctctgtca |
24394385 |
T |
|
| Q |
134 |
atgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccggagaaactaaaaattcggcaaagagtggt |
233 |
Q |
| |
|
||||||| |||||||| ||||| || ||||| |||||||||||||||||| | ||||||||||| ||||| ||||||| ||| |||||| |||||| |
|
|
| T |
24394384 |
atgacaagttcagtagtaaactatacaaggttaaaataggaactgtagttgcacaaaaggaatccgaacctgagaaacaggaaactcggcagcgagtgga |
24394285 |
T |
|
| Q |
234 |
ggaggac |
240 |
Q |
| |
|
||||||| |
|
|
| T |
24394284 |
ggaggac |
24394278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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