View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_low_19 (Length: 250)
Name: NF3430_low_19
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_low_19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 40590664 - 40590440
Alignment:
| Q |
9 |
caagaatataaataaactatagtgcaaccattttagtagtttcaattttaaatgtcaatatgttacagacttttctattgaaacacataatattcaatga |
108 |
Q |
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| T |
40590664 |
caagaaaataaataaactatagtgcaaccattttagtagtttcaattttaaa-----------------cttttctattgaaactcataatattcaatga |
40590582 |
T |
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| Q |
109 |
atttaaaatcaaatccaaaatcgatgtacgggaggagtctgagtcaattttaggatgtccaagtttggtgaacttgattttcttcgttttttattttgaa |
208 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40590581 |
atttcaaatcaaatccaaaatcgatgtacgggaggagtctgagtcaattttaggatgtccaagtttagtgaacttgattttcttcgttttttattttgaa |
40590482 |
T |
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| Q |
209 |
aaaagacgtgacaactttgagtacaagaaaaaacatgctgta |
250 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40590481 |
aaaagacgtgacaactttgagtacaagaaaaaacgtgctgta |
40590440 |
T |
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