View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_low_20 (Length: 250)
Name: NF3430_low_20
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 2885776 - 2885992
Alignment:
| Q |
1 |
ctcgcccgatgattcattgaaagttatttggatgtaaggggacataagatctgcaaatttgtgtttgtagttttcaacaaacttacgaagatcagatggg |
100 |
Q |
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| T |
2885776 |
ctcgcccgatgattcattgaaagttatttggatgtaaggggacataagatctgtaaatttgtgtttgtagttttcaacaaacttacgaagatcagatggg |
2885875 |
T |
|
| Q |
101 |
cagaattgctcatacatggcataaacaaacataaggctagccgcaattgagcctaattgtgacaatatttccccaattcccattgccatctctaatactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2885876 |
cagaattgctcatacatggcataaacaaacataaggctagccgcaattgagcctaattgtgacaatatttccccaattcccattgccatctctaatactt |
2885975 |
T |
|
| Q |
201 |
agaaacgattgtgccta |
217 |
Q |
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||||||||||||||||| |
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| T |
2885976 |
agaaacgattgtgccta |
2885992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 2866589 - 2866806
Alignment:
| Q |
1 |
ctcgcccgatgattcattgaaagttatttggatgt-aaggggacataagatctgcaaatttgtgtttgtagttttcaacaaacttacgaagatcagatgg |
99 |
Q |
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|||| |||||||||||| ||||||||||||| || ||||||||||||| |||| |||||||| ||| ||||||||||||||| ||||||||||||| |
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| T |
2866589 |
ctcgtccgatgattcataaaaagttatttggacgttaaggggacataaggtctgtaaatttgttcatgtgcttttcaacaaacttatgaagatcagatgg |
2866688 |
T |
|
| Q |
100 |
gcagaattgctcatacatggcataaacaaacataaggctagccgcaattgagcctaattgtgacaatatttccccaattcccattgccatctctaatact |
199 |
Q |
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| T |
2866689 |
gcagaattgctcatacatggcataaagaaacattaggctagcggcaattgagcctaattgtgacaatatttccccaattcccattgccatctctaatact |
2866788 |
T |
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| Q |
200 |
tagaaacgattgtgccta |
217 |
Q |
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||||||| |||||||||| |
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| T |
2866789 |
tagaaactattgtgccta |
2866806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 2861210 - 2861380
Alignment:
| Q |
1 |
ctcgcccgatgattcattgaaagttatttggatgtaaggggacataagatctgcaaatttgtgtttgtagttttcaacaaacttacgaagatcagatggg |
100 |
Q |
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||||||||||||||||| |||||||||| || ||||||||||||||| |||| |||||||| ||| ||||||||||||||| |||||||||||||| |
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| T |
2861210 |
ctcgcccgatgattcataaaaagttatttcgacgtaaggggacataaggtctgtaaatttgttcatgtgcttttcaacaaacttatgaagatcagatggg |
2861309 |
T |
|
| Q |
101 |
cagaattgctcatacatggcataaac--aaacataaggctagccgcaattgagcctaattgtgacaatatt |
169 |
Q |
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| T |
2861310 |
cagaattgctcatacatggcataaacaaaaacattaggctagccgcaattgagcctaattgtgacaatatt |
2861380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 2910642 - 2910744
Alignment:
| Q |
19 |
gaaagttatttggatgtaaggggacataagatctgcaaatttgtgtttgtagttttcaacaaacttacgaagatcagatgggcagaattgctcatacatg |
118 |
Q |
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|||| |||||||| ||| |||||||||||| ||| |||||||||| | || ||| |||||| ||||||||||||| ||||||||||||||||||| | |
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| T |
2910642 |
gaaacttatttggctgtgaggggacataaggtctacaaatttgtgcgtttattttcgaacaaatctacgaagatcagaagggcagaattgctcatacaag |
2910741 |
T |
|
| Q |
119 |
gca |
121 |
Q |
| |
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||| |
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| T |
2910742 |
gca |
2910744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 2841611 - 2841525
Alignment:
| Q |
97 |
tgggcagaattgctcatacatggcataaacaaacataaggctagccgcaattgagcctaattgtgacaatatttccccaattcccat |
183 |
Q |
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|||| |||||| ||||||||||||||| |||||||| | ||||||| |||||||||| | |||| ||||||||| ||||||||| |
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| T |
2841611 |
tgggaagaatttctcatacatggcatatacaaacattatgctagccattattgagcctaggtttgaccatatttccctaattcccat |
2841525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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