View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3430_low_23 (Length: 247)
Name: NF3430_low_23
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_low_23 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 12094870 - 12094633
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacataaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12094870 |
aaaaattgtattggcatgctattttcaatacataaccgcaataaaaacaatgtgatttactagatgaaccatatgtattggtattgtcggtatgtattgg |
12094771 |
T |
|
| Q |
101 |
tattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
12094770 |
tattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatagaggaaatcaaagacaagg |
12094671 |
T |
|
| Q |
201 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12094670 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
12094633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 44277220 - 44277457
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacataaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattgg |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
44277220 |
aaaaattatattggcatgctattttcaatacataaccgcagcaaaaaccatgtgatttactagatgaaccatatgtattggtattgccagtatgtattgg |
44277319 |
T |
|
| Q |
101 |
tattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
44277320 |
tattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggagaaaatcaaagacaagg |
44277419 |
T |
|
| Q |
201 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44277420 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
44277457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 40931908 - 40931677
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacataaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattgg |
100 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| | ||||||| || |
|
|
| T |
40931908 |
aaaaattgtgatggcatgctatttttaatacataaccgcagcaaaaacaat-tgatttactagatgaaccgtatgtattggtattgtcactatgtatcgg |
40931810 |
T |
|
| Q |
101 |
tattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagg |
200 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
40931809 |
tattgaaggata-ttgactttaattaattttggtattggtattgggagtaactatgagatggggtaaataaacataaaatggaggaaatcaaagacaaga |
40931711 |
T |
|
| Q |
201 |
gtataataggaacttttgtgtcaaactagcttgt |
234 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| |
|
|
| T |
40931710 |
gtataataggaacttttgtgttaatctagcttgt |
40931677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 94 - 238
Target Start/End: Complemental strand, 19911704 - 19911560
Alignment:
| Q |
94 |
gtattggtattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaa |
193 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
19911704 |
gtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgaggtggggtaaataaatgtaaaatggaggaaatcaaa |
19911605 |
T |
|
| Q |
194 |
gacaagggtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19911604 |
gacaagggtataataggaacttttgtgtcaaactaacttgtcctt |
19911560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 19911836 - 19911693
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacataaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
19911836 |
aaaaattgtattggcatgctattttcaatacataaccgaagcaaaaacaatgtgatttaatagatgaaccatatgtattggtattgccagtatgtattgg |
19911737 |
T |
|
| Q |
101 |
tattgaaggatggttgaatttaattaattttggtattggtattg |
144 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19911736 |
tattgaaggatgattgaatttaattaattttggtattggtattg |
19911693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 96 - 238
Target Start/End: Complemental strand, 38805444 - 38805296
Alignment:
| Q |
96 |
attggtattgaaggatggttgaatttaattaattttggtattggtattgg------gagtaattatgagatggggtaaataaatgtaaaatggaggaaat |
189 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38805444 |
attggtattgaaggatgattgaatttaattaattttggtattggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaat |
38805345 |
T |
|
| Q |
190 |
taaagacaagggtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38805344 |
caaagacaagggtataataggaacttttgtgtcaaactagcttgtcctt |
38805296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 136 - 238
Target Start/End: Complemental strand, 4226856 - 4226757
Alignment:
| Q |
136 |
ttggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttgtc |
235 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
4226856 |
ttggtattgagagtaattatgagatggggtaaataaat--aaaatggaggaaatcaaacacaagggtataataggaac-tttgtgtcaaactagtttgtc |
4226760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 136 - 238
Target Start/End: Complemental strand, 4235900 - 4235801
Alignment:
| Q |
136 |
ttggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttgtc |
235 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4235900 |
ttggtattgagagtaattatgagattgggtaaataaat--aaaatggaggaaatcaaacacaagggtataataggaac-tttgtatcaaactagcttgtc |
4235804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38805475 - 38805443
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacat |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
38805475 |
aaaaattgtattggcatgctattttcaatacat |
38805443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 13984756 - 13984993
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacataaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
13984756 |
aaaaattgtattggcatgctattttcaatacataaccacaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattgg |
13984855 |
T |
|
| Q |
101 |
tattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagg |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13984856 |
tattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagg |
13984955 |
T |
|
| Q |
201 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13984956 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
13984993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3943348 - 3943111
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacataaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattgg |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
3943348 |
aaaaattatattggcatgctattttcaatacataaccgcagtaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattgg |
3943249 |
T |
|
| Q |
101 |
tattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagg |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3943248 |
tattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagg |
3943149 |
T |
|
| Q |
201 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3943148 |
gtataataggaacttttgtgtcaaattagcttgtcctt |
3943111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9588958 - 9588721
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacataaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
9588958 |
aaaaattgtattggcatgctattttcaatatataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattgg |
9588859 |
T |
|
| Q |
101 |
tattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
9588858 |
tattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggagaaaatcaaagacaagg |
9588759 |
T |
|
| Q |
201 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
9588758 |
gtataataggaacttttgtgtcaaaatagattgtcctt |
9588721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 41959276 - 41959129
Alignment:
| Q |
91 |
tatgtattggtattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatt |
190 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41959276 |
tatgtattggtattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatc |
41959177 |
T |
|
| Q |
191 |
aaagacaagggtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41959176 |
aaagacaagggtataatatgaacttttgtgtcaaactagcttgtcctt |
41959129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 238
Target Start/End: Original strand, 44228068 - 44228230
Alignment:
| Q |
75 |
gtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatg |
174 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| || |||| ||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
44228068 |
gtatcggtattgccggtatgtattggtattgccatttgattgactttaattaaatttggtattggtattggaagtgattattagatggggtaaataaatg |
44228167 |
T |
|
| Q |
175 |
taaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||||||||||||| |||| | ||||||||||||| |
|
|
| T |
44228168 |
taaaatgaaggaaataaaaaacaagggtataataggaacttttatgtc-agctagcttgtcctt |
44228230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 1168499 - 1168412
Alignment:
| Q |
149 |
taattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| | || |||||||||||||||| |||||||||||| |
|
|
| T |
1168499 |
taattatgagacggggtaaataaat--aaaatggaggaaatcaaagacaagggtaaactatgaacttttgtgtcaaaatagcttgtcctt |
1168412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 41959299 - 41959261
Alignment:
| Q |
49 |
aatgtgatttactagatgaaccatatgtattggtattga |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41959299 |
aatgtgatttactagatgaaccatatgtattggtattga |
41959261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 10646880 - 10646643
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacataaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
10646880 |
aaaaattgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattgg |
10646781 |
T |
|
| Q |
101 |
tattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagg |
200 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10646780 |
tattgaaggatgattcaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagg |
10646681 |
T |
|
| Q |
201 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10646680 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
10646643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 41307726 - 41307963
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacataaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
41307726 |
aaaaattgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgtcagtatgtattgg |
41307825 |
T |
|
| Q |
101 |
tattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41307826 |
tattgaaggatgattgaatttaattaattttgatattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagg |
41307925 |
T |
|
| Q |
201 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41307926 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
41307963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8697663 - 8697900
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacataaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
8697663 |
aaaaattgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatatattgg |
8697762 |
T |
|
| Q |
101 |
tattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagg |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8697763 |
tattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagg |
8697862 |
T |
|
| Q |
201 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8697863 |
gtataataggaacttttgtgtcaaactagtttgtcctt |
8697900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 45278466 - 45278703
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacataaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattgg |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
45278466 |
aaaaattatattggcatgctattttcaatacataaccgcagtaaaaacaatgtgatttactagatgaaccatatgtattggtattgccaatatgtattgg |
45278565 |
T |
|
| Q |
101 |
tattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagg |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45278566 |
tattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagg |
45278665 |
T |
|
| Q |
201 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45278666 |
gtataataggaacttttgtgtcaaattagcttgtcctt |
45278703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 40486223 - 40486455
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacataaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
40486223 |
aaaaattgtattggcatgctattttcaatacataagc-----aaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattgg |
40486317 |
T |
|
| Q |
101 |
tattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagg |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40486318 |
tattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagg |
40486417 |
T |
|
| Q |
201 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40486418 |
gtataataggaacttttgtgtcaaattagcttgtcctt |
40486455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 25059898 - 25060135
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacataaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
25059898 |
aaaaattgtattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgtcagtatgtattgg |
25059997 |
T |
|
| Q |
101 |
tattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25059998 |
tattgaaggatgattgaatttaattaattttggtattggtattgagagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagg |
25060097 |
T |
|
| Q |
201 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25060098 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
25060135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2911313 - 2911550
Alignment:
| Q |
1 |
aaaaattgtattggcatgctattttcaatacataaccgcaacaaaaacaatgtgatttactagatgaaccatatgtattggtattgacggtatgtattgg |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
2911313 |
aaaaattatattggcatgctattttcaatacataaccgcagcaaaaacaatgtgatttactagatgaaccatatgtattggtattgccagtatgtattgg |
2911412 |
T |
|
| Q |
101 |
tattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagg |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2911413 |
tattgaaggatgattgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagg |
2911512 |
T |
|
| Q |
201 |
gtataataggaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2911513 |
gtataataggaacttttgtgtcaaattagcttgtcctt |
2911550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 34224256 - 34224380
Alignment:
| Q |
114 |
ttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34224256 |
ttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaac |
34224355 |
T |
|
| Q |
214 |
ttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
34224356 |
ttttgtgtcaaactagcttgtcctt |
34224380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 23641 - 23518
Alignment:
| Q |
115 |
tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaact |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23641 |
tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaagggtataataggaact |
23542 |
T |
|
| Q |
215 |
tttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
23541 |
tttgtgtcaaactagcttgtcctt |
23518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 19996594 - 19996717
Alignment:
| Q |
115 |
tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaact |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
19996594 |
tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaatcaaagacaaaggtataataggaact |
19996693 |
T |
|
| Q |
215 |
tttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
19996694 |
tttgtgtcaaactagcttgtcctt |
19996717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 115 - 235
Target Start/End: Original strand, 15305094 - 15305214
Alignment:
| Q |
115 |
tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaact |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
15305094 |
tgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggatgaaatcaaagacaagggtataataggaact |
15305193 |
T |
|
| Q |
215 |
tttgtgtcaaactagcttgtc |
235 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
15305194 |
tttgtgtcaaacttgcttgtc |
15305214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 31485702 - 31485620
Alignment:
| Q |
75 |
gtattggtattgacggtatgtattggtattgaaggatggttgaatttaattaattttggtattggtattgggagtaattatga |
157 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||| ||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
31485702 |
gtattggtattaccggtatgtattggtattgccatttgattgactttaattaattttggtattggtattcgaagtaattatga |
31485620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 19361817 - 19361698
Alignment:
| Q |
119 |
tttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagacaagggtataataggaacttttg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19361817 |
tttaattaattttggtattggtattgggagtaattattagatggggtaaataaatataaaatggaggaaatcaaagacaagggtataataggaacttttg |
19361718 |
T |
|
| Q |
219 |
tgtcaaactagcttgtcctt |
238 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
19361717 |
tgtcaaactagcttgtcctt |
19361698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 20541640 - 20541512
Alignment:
| Q |
114 |
ttgaatttaattaattttggtattggtattgggagtaattatgagatggggtaaataaatgtaaaatggaggaaattaaagac----aagggtataatag |
209 |
Q |
| |
|
|||| |||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
20541640 |
ttgactttaattagttttgatattggtatcaggagtaattatgagatgaggtaaataaatgtaaaacagaggaaatcaaagacaagtaagggtataatag |
20541541 |
T |
|
| Q |
210 |
gaacttttgtgtcaaactagcttgtcctt |
238 |
Q |
| |
|
||||||||||||| |||||| |||||||| |
|
|
| T |
20541540 |
gaacttttgtgtcgaactagtttgtcctt |
20541512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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