View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_low_24 (Length: 241)
Name: NF3430_low_24
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 32592436 - 32592579
Alignment:
| Q |
84 |
cataccccatggggggtgtctgaccaagtccattttgcaacatataactctcaactttggttacattgttgtttcctaataaaggagcagctgaagatga |
183 |
Q |
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| T |
32592436 |
cataccccatgggaggtgtctgaccaagtccattttgcaacatataactctcaactttggttacattgttgtttcctaataaaggagcagctgaagatga |
32592535 |
T |
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| Q |
184 |
tggaacacttgcaataatattcagcaacacgaggatacaaaatg |
227 |
Q |
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| T |
32592536 |
tggaacacatgcaataatattcagcaacacgaggatacaaaatg |
32592579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 32602578 - 32602724
Alignment:
| Q |
84 |
cataccccatggggggtgtctgaccaagtccattttgcaacatataactctcaactttggttacattgt---tgtttcctaataaaggagcagctgaaga |
180 |
Q |
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| T |
32602578 |
cataccccatgggaggtgtctgaccaagtccattttgcaacatataactcttaattttggttacattgttgttgtttcctaataatcgagcagctgaaga |
32602677 |
T |
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| Q |
181 |
tgatggaacacttgcaataatattcagcaacacgaggatacaaaatg |
227 |
Q |
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| T |
32602678 |
tgatggaacacttgcaataatattcagcaacatgaggatacaaaatg |
32602724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 32592384 - 32592431
Alignment:
| Q |
4 |
gtgtgaatcataaaagaaaaaatggatatatttgaatgaacaatggat |
51 |
Q |
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| T |
32592384 |
gtgtgaatcataaaagaaaaaatggatatatttgaatgaacaatggat |
32592431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 32602523 - 32602573
Alignment:
| Q |
1 |
tatgtgtgaatcataaaagaaaaaatggatatatttgaatgaacaatggat |
51 |
Q |
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| T |
32602523 |
tatgtgagaatcataaaagaaaaaatggatatatttgaatgaacaatggat |
32602573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 35125041 - 35125111
Alignment:
| Q |
64 |
tatagataaagaaggtatagcataccccatggggggtgtctgaccaagtccattttgcaacatataactct |
134 |
Q |
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| T |
35125041 |
tatacatagagagggtataacataccccatgggaggtgtctgaccaagtccattttgtaacaaataactct |
35125111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 35125149 - 35125197
Alignment:
| Q |
151 |
gttgtttcctaataaaggagcagctgaagatgatggaacacttgcaata |
199 |
Q |
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| T |
35125149 |
gttggttcctaataaacgagcagctgaagatgatggaacacttgcaata |
35125197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 34581190 - 34581233
Alignment:
| Q |
156 |
ttcctaataaaggagcagctgaagatgatggaacacttgcaata |
199 |
Q |
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| T |
34581190 |
ttcctaataaacgagcagctgtagatgatggaatacttgcaata |
34581233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 34581094 - 34581147
Alignment:
| Q |
81 |
tagcataccccatggggggtgtctgaccaagtccattttgcaacatataactct |
134 |
Q |
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| T |
34581094 |
tagcttaccccatgggaggagtacgtccaagtccattttgcaacatataactct |
34581147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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