View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_low_25 (Length: 241)
Name: NF3430_low_25
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2860860 - 2860634
Alignment:
| Q |
1 |
taaagctttacaccaacaatagcggttgttggtggatctcaggatggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2860860 |
taaagctttacaccaacaatagcggttgttggtggatgtcagggtggagtcacacaaattttgcacaccctgcaaggtttgaaacacttgctatggaacc |
2860761 |
T |
|
| Q |
101 |
ggagaagaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactc |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2860760 |
ggagaagaaagaagagatcataaacgatcttgttaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactc |
2860661 |
T |
|
| Q |
201 |
tatggtccaccaggaactgggaaatct |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
2860660 |
tatggtccaccaggaactgggaaatct |
2860634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2866239 - 2866013
Alignment:
| Q |
1 |
taaagctttacaccaacaatagcggttgttggtggatctcaggatggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2866239 |
taaagctttacaccaacaatagcggttgttggtggatgtcggggtggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaacc |
2866140 |
T |
|
| Q |
101 |
ggagaagaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactc |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2866139 |
ggagaagaaagaagagatcataaacgatcttgttaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacgcggttatctactc |
2866040 |
T |
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| Q |
201 |
tatggtccaccaggaactgggaaatct |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
2866039 |
tatggtccaccaggaactgggaaatct |
2866013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2885429 - 2885203
Alignment:
| Q |
1 |
taaagctttacaccaacaatagcggttgttggtggatctcaggatggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaacc |
100 |
Q |
| |
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|||||||||||||||||||| | |||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2885429 |
taaagctttacaccaacaatggtggttgttggtggatgtcggggtggagtcacacaaattttgcacaccctgcaaggtttgaaacacttgctatggaacc |
2885330 |
T |
|
| Q |
101 |
ggagaagaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactc |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2885329 |
ggagaagaaagaagagatcataaacgatcttgttaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactt |
2885230 |
T |
|
| Q |
201 |
tatggtccaccaggaactgggaaatct |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
2885229 |
tatggtccaccaggaactgggaaatct |
2885203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 2910231 - 2910049
Alignment:
| Q |
45 |
tggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaaga |
144 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
2910231 |
tggagtcacacaacttttgagcaccctgcaaggtttgaaacacttgctatggaaccggagaagaaggaagagatcataaacgatcttgttaaattcaaga |
2910132 |
T |
|
| Q |
145 |
aagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatct |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||||| || |||||| |
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| T |
2910131 |
aagggaaagagtattatgctaaagttggaaaggcgtggaaacgtggttatctagtttatggtccaccaggaaccggaaaatct |
2910049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 45 - 227
Target Start/End: Original strand, 2842113 - 2842295
Alignment:
| Q |
45 |
tggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaaga |
144 |
Q |
| |
|
||||||||||||| ||||| |||||| ||||| ||||||||||||||| ||||||| | |||||||||||||| |||| |||||| |||||||||||| |
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| T |
2842113 |
tggagtcacacaacttttgagcacccggcaagttttgaaacacttgctttggaaccaaaaaagaaagaagagattctaaatgatcttgttaaattcaaga |
2842212 |
T |
|
| Q |
145 |
aagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatct |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||| |||||||| || |||||| |
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| T |
2842213 |
aagggaaagagtattatgctaaagttggaaaagcttggaaacgtggttatctactttttggtcctccaggaaccggtaaatct |
2842295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 2833507 - 2833325
Alignment:
| Q |
45 |
tggagtcacacaaattttgcgcaccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaaga |
144 |
Q |
| |
|
|||| |||||||| ||||| ||| |||||||| |||| ||| || ||||||||||| || |||||| ||||||| |||| |||||| |||| ||||||| |
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| T |
2833507 |
tggaatcacacaacttttgagcatcctgcaagatttggaaccctagctatggaaccagaaaagaaacaagagattttaaatgatcttcttaagttcaaga |
2833408 |
T |
|
| Q |
145 |
aagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatct |
227 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||| |
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| T |
2833407 |
aaggtaaagagtattatgctaaagttggaaaggcttggaaacgtggttatctactttatggtcctccaggaactggaaaatct |
2833325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 227
Target Start/End: Original strand, 14577872 - 14578033
Alignment:
| Q |
66 |
caccctgcaaggtttgaaacacttgctatggaaccggagaagaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgcta |
165 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||||||||||||| ||| |||||||| |||| |||||| ||| |||||||| ||||||| |
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| T |
14577872 |
caccctgcaaggttcgaaacacttgctatggatgcaaagaagaaagaagagataatagacgatcttgttaagttcaaggcaggtaaagagtactatgcta |
14577971 |
T |
|
| Q |
166 |
aagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatct |
227 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| | ||||| |||||||| || |||||| |
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|
| T |
14577972 |
aagttggaaaggcttggaaacgcggttatttacttttcggtcctccaggaaccggaaaatct |
14578033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 2828815 - 2828937
Alignment:
| Q |
105 |
aagaaagaagagatcataaacgatcttattaaattcaagaaagggaaagagtattatgctaaagttggaaaggcttggaaacggggttatctactctatg |
204 |
Q |
| |
|
||||||||||| || ||||| |||||| |||| ||||| | ||| |||||||| ||| ||||||| || |||||||||||||| ||||||||||| | || |
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|
| T |
2828815 |
aagaaagaagaaattataaatgatcttgttaagttcaaaacaggtaaagagtactatactaaagtcgggaaggcttggaaacgtggttatctactttttg |
2828914 |
T |
|
| Q |
205 |
gtccaccaggaactgggaaatct |
227 |
Q |
| |
|
|||| || |||||||| |||||| |
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| T |
2828915 |
gtcctcctggaactggaaaatct |
2828937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 1800792 - 1800863
Alignment:
| Q |
156 |
tattatgctaaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatct |
227 |
Q |
| |
|
|||||||| ||| | || |||||||||||||| |||||| |||| |||||||| |||||||| || |||||| |
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|
| T |
1800792 |
tattatgcaaaaatcggtaaggcttggaaacgcggttatttactttatggtcctccaggaacaggtaaatct |
1800863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 8043817 - 8043879
Alignment:
| Q |
165 |
aaagttggaaaggcttggaaacggggttatctactctatggtccaccaggaactgggaaatct |
227 |
Q |
| |
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|||||||| | |||||||||||| |||||| | | |||||||| |||||||||||||||||| |
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| T |
8043817 |
aaagttggtagggcttggaaacgtggttatttgttgtatggtcctccaggaactgggaaatct |
8043879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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