View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_low_27 (Length: 240)
Name: NF3430_low_27
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 95 - 222
Target Start/End: Complemental strand, 43939202 - 43939075
Alignment:
| Q |
95 |
gatcaaaatggaatttatctactcaacttgtgcaataatgtattgttatgtacatgtaggttcatattctttctagggatatgatgtattatggtggggt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43939202 |
gatcaaaatggaatttatctactcaacttgtgcaataatgtattgttatgtacatgtaggttcatattctttctagggatatgatgtattatggtggggt |
43939103 |
T |
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| Q |
195 |
tttgttgaactatctgtcaccaagcaca |
222 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
43939102 |
tttgttgaactatctgtcaccaagcaca |
43939075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 43939358 - 43939308
Alignment:
| Q |
1 |
acagattgatacacagtatagaaaactaactcctactattagtggagcgta |
51 |
Q |
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| T |
43939358 |
acagaatgatacacagtatagaaaactaactcctactattagtggagcgta |
43939308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34290023 - 34289973
Alignment:
| Q |
1 |
acagattgatacacagtatagaaaactaactcctactattagtggagcgta |
51 |
Q |
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| T |
34290023 |
acagactgatacacagtatagaaaactaactcctactattagtggagcgta |
34289973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34296657 - 34296607
Alignment:
| Q |
1 |
acagattgatacacagtatagaaaactaactcctactattagtggagcgta |
51 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34296657 |
acagactgatacacagtatagaaaactaactcctactattagtggagcgta |
34296607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24485366 - 24485416
Alignment:
| Q |
1 |
acagattgatacacagtatagaaaactaactcctactattagtggagcgta |
51 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24485366 |
acagactgatacacagtatagaaaactaactcctactattagtggagcgta |
24485416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24489861 - 24489911
Alignment:
| Q |
1 |
acagattgatacacagtatagaaaactaactcctactattagtggagcgta |
51 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24489861 |
acagactgatacacagtatagaaaactaactcctactattagtggagcgta |
24489911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24498195 - 24498245
Alignment:
| Q |
1 |
acagattgatacacagtatagaaaactaactcctactattagtggagcgta |
51 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24498195 |
acagactgatacacagtatagaaaactaactcctactattagtggagcgta |
24498245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 32626965 - 32627015
Alignment:
| Q |
1 |
acagattgatacacagtatagaaaactaactcctactattagtggagcgta |
51 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32626965 |
acagactgatacacagtatagaaaactaactcctactattagtggagcgta |
32627015 |
T |
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