View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3430_low_32 (Length: 212)

Name: NF3430_low_32
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3430_low_32
NF3430_low_32
[»] chr6 (2 HSPs)
chr6 (1-212)||(5750406-5750617)
chr6 (1-212)||(19408543-19408750)
[»] chr1 (2 HSPs)
chr1 (5-212)||(45676700-45676907)
chr1 (1-130)||(17873331-17873460)
[»] chr2 (2 HSPs)
chr2 (1-208)||(35295948-35296155)
chr2 (2-136)||(11086713-11086840)
[»] chr3 (3 HSPs)
chr3 (6-131)||(31162108-31162233)
chr3 (131-212)||(31162261-31162342)
chr3 (116-164)||(2949635-2949683)
[»] chr7 (2 HSPs)
chr7 (1-123)||(21093011-21093133)
chr7 (5-77)||(28870711-28870783)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 5750617 - 5750406
Alignment:
Q  1 taacctttcaaccatttacaaacctgtaacagggtaagcctaacctatccctaatgtaatcagctctaacttgtaagtgaatctcattcatccataaaat 100  Q
    |||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5750617 taacctttcaaccatttacaaacctgtaacagggaaagcctatcatatccctaatgtaatcagctctaacttgtaagtgaatctcattcatccataaaat 5750518  T
Q  101 agaattacacgacataccaatatttgctaatctatcagcacaacaattaccttccctaaaaatatgtgtgaccaaaaaattcatctgccttgatagagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5750517 agaattacacgacataccaatatttgctaatctatcagcacaacaattaccttccctaaaaatatgtgtgaccaaaaaattcatctgccttgatagagaa 5750418  T
Q  201 agacaattatcc 212  Q
    ||||||||||||    
T  5750417 agacaattatcc 5750406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 19408543 - 19408750
Alignment:
Q  1 taacctttcaaccatttacaaacctgtaacagggtaagcctaacctatccctaatgtaatcagctctaacttgtaagtgaatctcattcatccataaaat 100  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |||||||||||    |||||||||    
T  19408543 taacctttgaaccatttacaaacctgtaacagggtaagtctaacctatccttaatgtaatcaggtctaacttgtacgtgaatctcat----ccataaaat 19408638  T
Q  101 agaattacacgacataccaatatttgctaatctatcagcacaacaattaccttccctaaaaatatgtgtgaccaaaaaattcatctgccttgatagagaa 200  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  19408639 agaattacaagacataccaacatttgctaatctatcagcacaacaattaccttccctaaaaatatgtgtgaccataaagttcatatgccttgatagagaa 19408738  T
Q  201 agacaattatcc 212  Q
    ||||||||||||    
T  19408739 agacaattatcc 19408750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 45676907 - 45676700
Alignment:
Q  5 ctttcaaccatttacaaacctgtaacagggtaagcctaacctatccctaatgtaatcagctctaacttgtaagtgaatctcattcatccataaaatagaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676907 ctttcaaccatttacaaacctgtaacagggtaagcctaacctatccctaatgtaatcagctctaacttgtaagtgaatctcattcatccataaaatagaa 45676808  T
Q  105 ttacacgacataccaatatttgctaatctatcagcacaacaattaccttccctaaaaatatgtgtgaccaaaaaattcatctgccttgatagagaaagac 204  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45676807 ttacacgacataccaatatttgctaatttatcagcacaacaattaccttccctaaaaatatgtgtgaccaaaaagttcatctgccttgatagagaaagac 45676708  T
Q  205 aattatcc 212  Q
    ||||||||    
T  45676707 aattatcc 45676700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 17873331 - 17873460
Alignment:
Q  1 taacctttcaaccatttacaaacctgtaacagggtaagcctaacctatccctaatgtaatcagctctaacttgtaagtgaatctcattcatccataaaat 100  Q
    |||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17873331 taacatttcaaccatttacaaacctgtaataaggtaagcctaacctatccctaatgtaatcagctctaacttgtaagtgaatctcattcatctataaaat 17873430  T
Q  101 agaattacacgacataccaatatttgctaa 130  Q
    ||||||||||||||||||||||||||||||    
T  17873431 agaattacacgacataccaatatttgctaa 17873460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 35296155 - 35295948
Alignment:
Q  1 taacctttcaaccatttacaaacctgtaacagggtaagcctaacctatccctaatgtaatcagctctaacttgtaagtgaatctcattcatccataaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||| | ||||||||||||||||||||||||| |||| ||||||||||||| ||    
T  35296155 taacctttcaaccatttacaaacctgtaacagggtaagtttaacctatccttcatgtaatcagctctaacttgtaagtaaatcccattcatccataagat 35296056  T
Q  101 agaattacacgacataccaatatttgctaatctatcagcacaacaattaccttccctaaaaatatgtgtgaccaaaaaattcatctgccttgatagagaa 200  Q
    |||||||||  |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |||||| |||||||||||||||||||||    
T  35296055 agaattacataacataccaatatttgctaatctatcaacacaacaattatcttccttaaaaatatgtgtgatcaaaaagttcatctgccttgatagagaa 35295956  T
Q  201 agacaatt 208  Q
    ||||||||    
T  35295955 agacaatt 35295948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 11086840 - 11086713
Alignment:
Q  2 aacctttcaaccatttacaaacctgtaacagggtaagcctaacctatccctaatgtaatcagctctaacttgtaagtgaatctcattcatccataaaata 101  Q
    ||||||||||| ||||||||||||| |||| | |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  11086840 aacctttcaacaatttacaaacctg-aacatgataagcctaacctatca------taatcagctctaacttgtaagtgaatctcattcatccataaaata 11086748  T
Q  102 gaattacacgacataccaatatttgctaatctatc 136  Q
    |||||| | |||||| |||||||||||||| ||||    
T  11086747 gaattataagacatagcaatatttgctaatttatc 11086713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 31162108 - 31162233
Alignment:
Q  6 tttcaaccatttacaaacctgtaacagggtaagcctaacctatccctaatgtaatcagctctaacttgtaagtgaatctcattcatccataaaatagaat 105  Q
    ||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  31162108 tttcagccatttacaaacttgtaacagggtaaacctaacctatccctaatgtaatcagttttaacttgtaagtgaatctcattcatccataaaatagaat 31162207  T
Q  106 tacacgacataccaatatttgctaat 131  Q
    |||| ||||| |||||||||||||||    
T  31162208 tacaagacatgccaatatttgctaat 31162233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 31162261 - 31162342
Alignment:
Q  131 tctatcagcacaacaattaccttccctaaaaatatgtgtgaccaaaaaattcatctgccttgatagagaaagacaattatcc 212  Q
    |||||||||||| |||||||||||  | ||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||    
T  31162261 tctatcagcacagcaattaccttctgttaaaatatatgtaaccataaagttcatctgccttgatagagaaagacaattatcc 31162342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 2949683 - 2949635
Alignment:
Q  116 accaatatttgctaatctatcagcacaacaattaccttccctaaaaata 164  Q
    |||||||||||||||| |||||| ||||||||| ||||| |||||||||    
T  2949683 accaatatttgctaatttatcagaacaacaatttccttctctaaaaata 2949635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 21093011 - 21093133
Alignment:
Q  1 taacctttcaaccatttacaaacctgtaacagggtaagcctaacctatccctaatgtaatcagctctaacttgtaagtgaatctcattcatccataaaat 100  Q
    |||||||| || ||||||||||||| |||||| |||||| |||| |||| |||||||||||| ||||||||| ||||| ||| |||||||||||||||||    
T  21093011 taacctttgaatcatttacaaacctataacagagtaagcttaacatatctctaatgtaatcaactctaacttataagtaaatttcattcatccataaaat 21093110  T
Q  101 agaattacacgacataccaatat 123  Q
    ||||||| |||||||||||||||    
T  21093111 agaattatacgacataccaatat 21093133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 28870783 - 28870711
Alignment:
Q  5 ctttcaaccatttacaaacctgtaacagggtaagcctaacctatccctaatgtaatcagctctaacttgtaag 77  Q
    ||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |||||||| ||||    
T  28870783 ctttccaccatttacaaacctctaacagggtaaacctaacttatccctaatgtaatcagttctaacttttaag 28870711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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