View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_low_33 (Length: 210)
Name: NF3430_low_33
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 54 - 191
Target Start/End: Complemental strand, 44728381 - 44728244
Alignment:
| Q |
54 |
gtgcatcacgtcagccctaagccctactaccactctccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagttcaccctccttaca |
153 |
Q |
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| T |
44728381 |
gtgcatcacgtcagccctaagccctactaccactctccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagttcaccctccttaca |
44728282 |
T |
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| Q |
154 |
ctccaaaaccagtttaccactctccaccagttcatcct |
191 |
Q |
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| T |
44728281 |
ctccaaaaccagtttaccactctccaccagttcatcct |
44728244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 44728453 - 44728380
Alignment:
| Q |
66 |
agccctaagccctactaccactctccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagt |
139 |
Q |
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| T |
44728453 |
agccctaaaccttactaccattccccaccaccaccaaagaagccatacaaatattcctctcctcctccaccagt |
44728380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 44728533 - 44728462
Alignment:
| Q |
68 |
ccctaagccctactaccactctccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagt |
139 |
Q |
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| T |
44728533 |
ccctaaaccttactaccattctccaccacccccaaagaaaccatacaaatattcttctcctccaccaccagt |
44728462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 12163615 - 12163667
Alignment:
| Q |
88 |
ctccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagtt |
140 |
Q |
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| T |
12163615 |
ctccaccaccaccaaaaaagccatataaatacccatctcccccaccaccagtt |
12163667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 12163170 - 12163220
Alignment:
| Q |
90 |
ccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagtt |
140 |
Q |
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| T |
12163170 |
ccaccacctccaaagaagccatacaaatacgcttctcctccacctccagtt |
12163220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 12192215 - 12192268
Alignment:
| Q |
87 |
tctccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagtt |
140 |
Q |
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| T |
12192215 |
tctccaccaccaccatctaagccatacaaatacgcttccccaccaccaccagtt |
12192268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 12163456 - 12163508
Alignment:
| Q |
88 |
ctccaccaccaccaaagaagccatacaaatactcatcccctccaccaccagtt |
140 |
Q |
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| T |
12163456 |
ctccaccaccacctaagaagccatataaatacccatctccaccaccgccagtt |
12163508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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