View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_low_4 (Length: 466)
Name: NF3430_low_4
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 31864893 - 31865107
Alignment:
| Q |
6 |
agaagcaaaggtatattggtgctttgttctaaggacagtgaagaaaatgtttgcattaatactctcaaacagtcccttaaatcagcagtgaccaaaattg |
105 |
Q |
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| T |
31864893 |
agaatcaaaagtatattggtgctttgttctaaggacagtgaagaaaatgtttgcattaatactctcaaacagtcccttaaatcagcagtgaccaaaattg |
31864992 |
T |
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| Q |
106 |
cttcatcatcaatggtatctaattgtcctacaagaagtaagaggcagagattctttttgccttctcattttgtatagtaatttgattgatgcaaaaatgt |
205 |
Q |
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| T |
31864993 |
cttcatcatcaatggtatctaattgtcctacaagaagtaagaggcagagattctttttgccttctcattttgtatagtaatttgattgatgcaaaaatgt |
31865092 |
T |
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| Q |
206 |
tattatctattcact |
220 |
Q |
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||||||||||||||| |
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| T |
31865093 |
tattatctattcact |
31865107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 297 - 451
Target Start/End: Original strand, 31865182 - 31865336
Alignment:
| Q |
297 |
atttattgtatacctctaagatatatagtttgtccattagggagatgaaatattgattttgtaccaccaattaaggtaaaagcaaagttaaagtgggaaa |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31865182 |
atttattgtatacctctaagatatatagtttgtccattagggagatgaaatattgattttgtaccaccaattaaggtaaaagcaaagttaaagtgggaaa |
31865281 |
T |
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| Q |
397 |
ttgaaagctaggcaaagcatatacataaagtaaagtaatcaggtgtgtgattaat |
451 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31865282 |
ttgaaagctaggcaaagcatatgcataaagtaaagtaatcaggtgtgtgattaat |
31865336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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