View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3430_low_9 (Length: 312)
Name: NF3430_low_9
Description: NF3430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3430_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 40276701 - 40276405
Alignment:
| Q |
1 |
atcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgcgtgaccttagagctcttgatccaaaactctctaacccttct |
100 |
Q |
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| T |
40276701 |
atcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgcgtgaccttagagctcttgatccaaaactctctaacccttct |
40276602 |
T |
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| Q |
101 |
tctatcttaggacgagaaaaagctattgtcgttaacttagaacacattcaagcaattatcacttccaatgaagtgcttatgattaattccacaaaccctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40276601 |
tctatcttaggacgagaaaaagctattgtcgttaacttagaacacattcaagcaattatcacttccaatgaagtgcttatgattaattccacaaaccctt |
40276502 |
T |
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| Q |
201 |
tctttcttcgtttccttcaagatcttcaagcgcggcttcctcattctaatagttctaataatatccaaattgccaataatgtggatggtgattatga |
297 |
Q |
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| T |
40276501 |
tctttcttcgtttccttcaagatcttcaagcgcggcttcctcattctaatagttctaataatatccaaattgccaataatgtggatggtgattatga |
40276405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 39625421 - 39625193
Alignment:
| Q |
1 |
atcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgcgtgaccttagagctcttgatccaaaactctctaacccttct |
100 |
Q |
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|||||| || || ||||| ||||||||||||||||||| ||||||||| |||||| | ||||||||||||| ||||| |||| || ||| | |||||| |
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| T |
39625421 |
atcacgtgtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcagccttct |
39625322 |
T |
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| Q |
101 |
tctatcttaggacgagaaaaagctattgtcgttaacttagaacacattcaagcaattatcacttccaatgaagtgcttatgattaattccacaaaccctt |
200 |
Q |
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| T |
39625321 |
tctatcttaggacgagaaaaagccattattgttaacttagaacacattagagcgattatcacttcgaatgaagtgcttatgattaattcaattgaccctt |
39625222 |
T |
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| Q |
201 |
tctttcttcgtttccttcaagatcttcaa |
229 |
Q |
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||||| |||| || ||||||||||||||| |
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| T |
39625221 |
tctttattcgctttcttcaagatcttcaa |
39625193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 39634971 - 39634743
Alignment:
| Q |
1 |
atcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgcgtgaccttagagctcttgatccaaaactctctaacccttct |
100 |
Q |
| |
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|||||| || || ||||| ||||||||||||||||||| ||||||||| |||||| | ||||||||||||| ||||| |||| || ||| | |||||| |
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| T |
39634971 |
atcacgtgtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgaccttagagtctttgatacaaagctttctcagccttct |
39634872 |
T |
|
| Q |
101 |
tctatcttaggacgagaaaaagctattgtcgttaacttagaacacattcaagcaattatcacttccaatgaagtgcttatgattaattccacaaaccctt |
200 |
Q |
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||||||||||||||||||||||| ||| | |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| | |||||| |
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| T |
39634871 |
tctatcttaggacgagaaaaagccattattgttaacttagaacacattagagcgattatcacttcgaatgaagtgcttatgattaattcaattgaccctt |
39634772 |
T |
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| Q |
201 |
tctttcttcgtttccttcaagatcttcaa |
229 |
Q |
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||||| |||| || ||||||||||||||| |
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| T |
39634771 |
tctttattcgctttcttcaagatcttcaa |
39634743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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