View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3431_high_1 (Length: 677)
Name: NF3431_high_1
Description: NF3431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3431_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 559
Target Start/End: Complemental strand, 7220711 - 7220167
Alignment:
| Q |
16 |
cattactctgatggggcaagttaattgatgctgctagaaacgttccatagcttccctgaatcagaaagatagaagtgtaactcaat-gtctataaaccta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |
|
|
| T |
7220711 |
cattactctgatggggcaagttaattgatgctgctagaaacgttccatagcttccctgaatcagaaatatagaagtgtaactcaatcgtatataaaccta |
7220612 |
T |
|
| Q |
115 |
tactttggagtgtcactatgatttcatcaaactcatcgttattccagacatacacttaaggatgactcactcaccgctgaacgagggattagtctaggct |
214 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
7220611 |
tactctggagtgtcactgtgatttcatcaaactaattgttattccagacagacacttaaggatgactcactcaccgcagaacgagggatttgtctaggct |
7220512 |
T |
|
| Q |
215 |
gtgttgcaggaactgaatgcgcctcatcatcagaagatgaatcgtcgtcgtttaatctcatagctgaaggtccactcttagcaactctcatgtaagtacg |
314 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||| | |||| ||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7220511 |
gtgttgcaggaaccgaatgcgcctcatcatcagaagatgaatcttcgt---tcaatcccattgccgaaggtccactcttagcaactctcatgtaagtacg |
7220415 |
T |
|
| Q |
315 |
agatggtggagtaacattaccagccaatgatcttgctgatctgtttgttgattcaatcaattaattcaaaactcat---ttcagaagattgcttaatcta |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7220414 |
agatggtggagtaacattaccagccaatgatcttgctgatctgtt----gactcaatcaattaattcaaaactcatcagttcagaagattgcttaatcta |
7220319 |
T |
|
| Q |
412 |
gtaatcaacaatttaa----agatgagtacttacccatagtagtattctggtttaggtattgctctgtgtctaccacttcttattggaatccctgactca |
507 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7220318 |
ctaattaacaatttaattaaagatgagtacttacccatagtagtattctggtttaggtattgctctgtgtctaccacttcttattggaatccctaactca |
7220219 |
T |
|
| Q |
508 |
aatccttcttttggtttcaaaggttttttctcttcttcataaatctattatt |
559 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7220218 |
aatctttcttttggtttcaaaggttttttctcttcttcataagtctattatt |
7220167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 7238641 - 7238603
Alignment:
| Q |
268 |
aatctcatagctgaaggtccactcttagcaactctcatg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7238641 |
aatctcatagctgaaggtccactcttagcaactctcatg |
7238603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 7243817 - 7243779
Alignment:
| Q |
268 |
aatctcatagctgaaggtccactcttagcaactctcatg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7243817 |
aatctcatagctgaaggtccactcttagcaactctcatg |
7243779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 604 - 665
Target Start/End: Complemental strand, 7220128 - 7220067
Alignment:
| Q |
604 |
gtatcattatgttttcctttttctcaaatttgatataaagaaagaacctcttcgatgatgat |
665 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||| |||||||||||||||||| ||| |||| |
|
|
| T |
7220128 |
gtatcattatattttccttcttctcagatttgatttaaagaaagaacctcttcaatgttgat |
7220067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University