View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3431_high_6 (Length: 474)

Name: NF3431_high_6
Description: NF3431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3431_high_6
NF3431_high_6
[»] chr8 (6 HSPs)
chr8 (249-453)||(10536195-10536399)
chr8 (110-258)||(10536026-10536174)
chr8 (112-210)||(10536737-10536835)
chr8 (110-196)||(32539409-32539495)
chr8 (110-168)||(30905978-30906036)
chr8 (165-210)||(32538325-32538370)
[»] chr1 (8 HSPs)
chr1 (249-453)||(14904270-14904474)
chr1 (110-258)||(14904495-14904641)
chr1 (110-267)||(9114845-9115001)
chr1 (110-267)||(9115952-9116107)
chr1 (110-210)||(14903832-14903932)
chr1 (110-204)||(17690887-17690981)
chr1 (110-196)||(37499396-37499482)
chr1 (110-204)||(17689762-17689855)
[»] chr4 (22 HSPs)
chr4 (249-453)||(28451214-28451418)
chr4 (110-258)||(28451439-28451586)
chr4 (110-204)||(9450874-9450968)
chr4 (112-210)||(28450778-28450876)
chr4 (110-198)||(3990897-3990985)
chr4 (112-197)||(4437708-4437793)
chr4 (110-198)||(9268049-9268137)
chr4 (110-198)||(10468702-10468790)
chr4 (110-198)||(52677578-52677666)
chr4 (110-197)||(4438996-4439083)
chr4 (110-204)||(9449741-9449835)
chr4 (110-196)||(12585382-12585468)
chr4 (110-196)||(49028487-49028573)
chr4 (111-168)||(52677804-52677861)
chr4 (110-154)||(45667257-45667301)
chr4 (110-168)||(10286436-10286494)
chr4 (112-166)||(16067578-16067632)
chr4 (110-168)||(36098771-36098829)
chr4 (110-168)||(49028289-49028347)
chr4 (110-198)||(622084-622171)
chr4 (110-170)||(17931314-17931374)
chr4 (110-154)||(25225816-25225860)
[»] chr6 (4 HSPs)
chr6 (1-94)||(11626501-11626595)
chr6 (110-198)||(5367637-5367725)
chr6 (110-198)||(3659174-3659261)
chr6 (110-170)||(8286814-8286874)
[»] chr5 (12 HSPs)
chr5 (110-267)||(9379956-9380113)
chr5 (110-267)||(9380608-9380763)
chr5 (110-197)||(34634094-34634181)
chr5 (110-212)||(1501039-1501141)
chr5 (110-198)||(23322320-23322408)
chr5 (110-198)||(25088430-25088518)
chr5 (110-198)||(25146399-25146487)
chr5 (112-199)||(5841098-5841185)
chr5 (110-168)||(23322124-23322182)
chr5 (110-168)||(43183256-43183314)
chr5 (110-170)||(42792974-42793034)
chr5 (112-156)||(20244515-20244559)
[»] chr2 (10 HSPs)
chr2 (110-267)||(4734107-4734262)
chr2 (112-267)||(4733332-4733485)
chr2 (110-204)||(14159232-14159326)
chr2 (110-196)||(4410599-4410685)
chr2 (110-204)||(14160372-14160466)
chr2 (110-198)||(38695110-38695198)
chr2 (112-170)||(18166661-18166719)
chr2 (112-170)||(4409188-4409246)
chr2 (110-168)||(38694914-38694972)
chr2 (110-168)||(42963020-42963078)
[»] chr7 (9 HSPs)
chr7 (112-214)||(18470167-18470269)
chr7 (110-212)||(18471714-18471816)
chr7 (110-212)||(8328221-8328323)
chr7 (111-198)||(8594089-8594176)
chr7 (110-198)||(4265198-4265286)
chr7 (176-255)||(8341924-8342001)
chr7 (110-163)||(8329038-8329091)
chr7 (242-279)||(18470918-18470955)
chr7 (110-154)||(8905666-8905710)
[»] chr3 (18 HSPs)
chr3 (110-204)||(16907956-16908050)
chr3 (110-198)||(27864825-27864913)
chr3 (110-198)||(24107177-24107265)
chr3 (110-167)||(38758860-38758917)
chr3 (110-166)||(31596740-31596797)
chr3 (110-170)||(27865048-27865108)
chr3 (110-170)||(46684124-46684184)
chr3 (110-168)||(3171515-3171573)
chr3 (110-168)||(38758634-38758692)
chr3 (110-154)||(18026117-18026161)
chr3 (110-170)||(19860517-19860577)
chr3 (110-166)||(24107405-24107461)
chr3 (112-167)||(21792245-21792300)
chr3 (110-164)||(21792373-21792427)
chr3 (378-416)||(53245385-53245423)
chr3 (110-154)||(14812453-14812497)
chr3 (110-142)||(18025906-18025938)
chr3 (110-198)||(19860712-19860799)
[»] scaffold0069 (1 HSPs)
scaffold0069 (110-198)||(19921-20009)
[»] scaffold0008 (2 HSPs)
scaffold0008 (110-196)||(266844-266930)
scaffold0008 (110-168)||(266647-266705)
[»] scaffold0006 (1 HSPs)
scaffold0006 (110-196)||(93657-93743)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 249 - 453
Target Start/End: Original strand, 10536195 - 10536399
Alignment:
Q  249 aattcatcacccattcatcttcatcattaaatccagtaattaaatttttccccaaagataaagcttttagctccaaatatttctttggcttttaagttgg 348  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10536195 aattcatcacccattcatcttcatcattaaatccagtaattaattttttccccaaagataaagcttttagctccaaatatttctatggcttttaagttgg 10536294  T
Q  349 aagatttgttgttattgttgttgtttttattgtgctatgaatgaaaagagatgaagttgttattgttggacttgttataagtaaatgatgtaatgaattg 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10536295 aagatttgttgttattgttgttgtttttattgtgctatgaatgaaaagagatgaggttgttattgttggacttgttataagtaaatgatgtaatgaattg 10536394  T
Q  449 gggta 453  Q
    |||||    
T  10536395 gggta 10536399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 110 - 258
Target Start/End: Original strand, 10536026 - 10536174
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaat 209  Q
    |||||||||||||||||||||||||||| |||||||||||| |||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10536026 agttatttgttggttacattttggtcccataagatattaacattacgttttggtcccttaacttgtaatatgttagtcaaataaatcctttccgttaaat 10536125  T
Q  210 tttatnnnnnnnnctgttaatcttcatcattgaacccagaattcatcac 258  Q
    |||||        || |||||||||||||||||||||||||||||||||    
T  10536126 tttataaaaaaaactattaatcttcatcattgaacccagaattcatcac 10536174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 10536835 - 10536737
Alignment:
Q  112 ttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaatt 210  Q
    ||||||||||||||||||||| |||| |||| |||||| ||||  |||||||||| |||||| || ||||||||||||||||||| |||||||||||||    
T  10536835 ttatttgttggttacattttgatcccataagttattaatgttacgttttggtcccctaacttatagtctgttagtcaaataaatcatttccgttaaatt 10536737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 32539495 - 32539409
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatc 196  Q
    ||||||||||||||||||||||  || | |||| ||||||| ||| ||||| |||||||||||| ||||| ||||| ||||||||||    
T  32539495 agttatttgttggttacattttaatctcataagttattaacattacatttttgtcccttaacttataatccgttagccaaataaatc 32539409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 30906036 - 30905978
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccctt 168  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||| | |||||||||||    
T  30906036 agttatttgttggttacattttagtcccataagttattaacgttacaatttggtccctt 30905978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 32538325 - 32538370
Alignment:
Q  165 ccttaacttgtaatctgttagtcaaataaatcctttccgttaaatt 210  Q
    ||||||||| |||||| ||| |||||||||| ||||||||||||||    
T  32538325 ccttaacttataatctattaatcaaataaattctttccgttaaatt 32538370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 249 - 453
Target Start/End: Complemental strand, 14904474 - 14904270
Alignment:
Q  249 aattcatcacccattcatcttcatcattaaatccagtaattaaatttttccccaaagataaagcttttagctccaaatatttctttggcttttaagttgg 348  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  14904474 aattcatcacccattcatcttcatcattaaatccagtaattaattttttccccaaagataaagctttcagctccaaatatttctatggcttttaagttgg 14904375  T
Q  349 aagatttgttgttattgttgttgtttttattgtgctatgaatgaaaagagatgaagttgttattgttggacttgttataagtaaatgatgtaatgaattg 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14904374 aagatttgttgttattgttgttgtttttattgtgctatgaatgaaaagagatgaggttgttattgttggacttgttataagtaaatgatgtaatgaattg 14904275  T
Q  449 gggta 453  Q
    |||||    
T  14904274 gggta 14904270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 110 - 258
Target Start/End: Complemental strand, 14904641 - 14904495
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaat 209  Q
    |||||||||||||||||||||||||||| |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  14904641 agttatttgttggttacattttggtcccataagatattaacattacgttttggtcccttaacttgtaatctgttagtcaaataaatcatttctgttaaat 14904542  T
Q  210 tttatnnnnnnnnctgttaatcttcatcattgaacccagaattcatcac 258  Q
    |||||        || |||||||||||||||||||||||||||||||||    
T  14904541 tttat--aaaaaactattaatcttcatcattgaacccagaattcatcac 14904495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 110 - 267
Target Start/End: Original strand, 9114845 - 9115001
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaat 209  Q
    |||||||||||||||||||||||||||| |||| |||||||||||  |||||||||||||| || ||||  ||||| |||||||||||||||  ||||||    
T  9114845 agttatttgttggttacattttggtcccataagttattaacgttacgttttggtcccttaatttataattcgttagccaaataaatcctttctattaaat 9114944  T
Q  210 tttatnnnnnnnnctgttaatcttcatcattgaacccagaattcatcacccattcatc 267  Q
    ||| |        |||||||||||||||||| |||||| |||||||||| ||||||||    
T  9114945 tttgt-aaaaaaactgttaatcttcatcattaaacccataattcatcactcattcatc 9115001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 9116107 - 9115952
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaat 209  Q
    |||||||||||||||||||||||||| | |||| ||||||||||   |||||||| |||||||| ||||| |||||  ||||||||| ||||||||||||    
T  9116107 agttatttgttggttacattttggtctcataagttattaacgtttcgttttggtctcttaacttataatccgttagctaaataaatcatttccgttaaat 9116008  T
Q  210 tttatnnnnnnnnctgttaatcttcatcattgaacccagaattcatcacccattcatc 267  Q
    ||| |        |||||||||||||||||| |||||| |||||||||| | ||||||    
T  9116007 tttgt--aaaatactgttaatcttcatcattaaacccaaaattcatcactccttcatc 9115952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 14903832 - 14903932
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaat 209  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||  |||||||||| |||||| || || |||||||||||||||| ||||||||||||    
T  14903832 agttatttgttggttacattttgatcccataagttattaacgttacgttttggtcccctaacttatagtccgttagtcaaataaatcatttccgttaaat 14903931  T
Q  210 t 210  Q
    |    
T  14903932 t 14903932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 17690981 - 17690887
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgt 204  Q
    ||||||||||||||||  || ||||||| |||| |||||||||||  ||||||||||||||||| || ||| |||| ||||||||||||| ||||    
T  17690981 agttatttgttggttatgttctggtcccataagttattaacgttacgttttggtcccttaacttatattctattagccaaataaatccttgccgt 17690887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 37499482 - 37499396
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatc 196  Q
    |||||||||||||||||||||||||| | |||| |||||| |||||| ||| ||| ||||| ||   ||||||||| ||||||||||    
T  37499482 agttatttgttggttacattttggtctcataagttattaatgttataatttcgtctcttaagttagtatctgttagccaaataaatc 37499396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 17689762 - 17689855
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgt 204  Q
    |||||||||||| |||| ||| |||| | |||| ||| ||||||| ||||| |||||||||||| || || |||||  |||||||||||| ||||    
T  17689762 agttatttgttgattacgttt-ggtctcataagttataaacgttacattttagtcccttaacttatattccgttagctaaataaatccttgccgt 17689855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 249 - 453
Target Start/End: Complemental strand, 28451418 - 28451214
Alignment:
Q  249 aattcatcacccattcatcttcatcattaaatccagtaattaaatttttccccaaagataaagcttttagctccaaatatttctttggcttttaagttgg 348  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  28451418 aattcatcacccattcatcttcatcattaaatctagtaattaattttttccccaaagataaagcttttagttccaaatatttctatggcttttaagttgg 28451319  T
Q  349 aagatttgttgttattgttgttgtttttattgtgctatgaatgaaaagagatgaagttgttattgttggacttgttataagtaaatgatgtaatgaattg 448  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28451318 aagatttgttgttattgttgttgtttttattgtgctatgaatgaaaagagatgaggttgttattgttggacttgttataagtaaatgatgtaatgaattg 28451219  T
Q  449 gggta 453  Q
    |||||    
T  28451218 gggta 28451214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 110 - 258
Target Start/End: Complemental strand, 28451586 - 28451439
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaat 209  Q
    |||||||||||||||||||||||||| | |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28451586 agttatttgttggttacattttggtctcataagatattaacattacgttttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaat 28451487  T
Q  210 tttatnnnnnnnnctgttaatcttcatcattgaacccagaattcatcac 258  Q
    |||||        || |||||||||||||||||||||||||||||||||    
T  28451486 tttat-aaaaaaactattaatcttcatcattgaacccagaattcatcac 28451439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 9450968 - 9450874
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgt 204  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||  ||||||||||||||||  || |||||||| ||||||||||||| ||||    
T  9450968 agttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttaactcatactctgttagccaaataaatccttgccgt 9450874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 28450778 - 28450876
Alignment:
Q  112 ttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaatt 210  Q
    ||||||||||||||||||||| |||| |||| |||||| ||||  |||||||||| |||||| || || |||||||||||||||| |||||||||||||    
T  28450778 ttatttgttggttacattttgatcccataagttattaatgttacgttttggtcccctaacttatagtccgttagtcaaataaatcatttccgttaaatt 28450876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 3990985 - 3990897
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    ||||| |||||||||||||||||||||| |||| ||||||||||| | ||||||||||||| ||   |||| |||| ||||||||||||    
T  3990985 agttaattgttggttacattttggtcccataagttattaacgttacaatttggtcccttaagttaatatctattagccaaataaatcct 3990897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 4437708 - 4437793
Alignment:
Q  112 ttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcc 197  Q
    |||||||||||||||| ||||||||| |||| |||||||||||  ||||||||| |||| ||  | |||||||| |||||||||||    
T  4437708 ttatttgttggttacaatttggtcccataagttattaacgttacgttttggtcctttaagttagactctgttagccaaataaatcc 4437793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 9268049 - 9268137
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    |||||||| ||||||||||||||||||| |||| |||||| |||| | ||||||||||||| ||   || |||||| ||||||||||||    
T  9268049 agttatttattggttacattttggtcccataagttattaaagttacaatttggtcccttaagttagtatttgttagccaaataaatcct 9268137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 10468790 - 10468702
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    |||||||||||||||||||||||||| | |||| ||||||||||| | |||||||| |||| ||   ||||| ||| ||||||||||||    
T  10468790 agttatttgttggttacattttggtctcataagttattaacgttacaatttggtccgttaagttagtatctgctagccaaataaatcct 10468702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 52677578 - 52677666
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    |||||||||||||||||| ||||||||| |||| ||||||||||| | |||||||| |||| ||   || |||||| ||||||||||||    
T  52677578 agttatttgttggttacaatttggtcccataagttattaacgttacaatttggtccattaagttagtatatgttagccaaataaatcct 52677666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 4439083 - 4438996
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcc 197  Q
    |||||||||||||||||| ||||||| | |||| |||||||||||  |||||||| ||||| ||  | ||||||||| ||||||||||    
T  4439083 agttatttgttggttacaatttggtctcataagttattaacgttacgttttggtctcttaagttagactctgttagttaaataaatcc 4438996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 9449741 - 9449835
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgt 204  Q
    ||||||||||||||||| |||||||| | |||| |||||||||||  ||||| |||||| |||  || |||||||| ||| ||||||||| ||||    
T  9449741 agttatttgttggttacgttttggtctcataagttattaacgttacgttttgatcccttgactcatactctgttagccaagtaaatccttaccgt 9449835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 12585468 - 12585382
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatc 196  Q
    ||||||||||||||||||||||| || | |||| ||||||| ||| | ||||||||||||| ||   || |||||| ||||||||||    
T  12585468 agttatttgttggttacattttgatctcataagttattaacattacaatttggtcccttaagttagtatatgttagccaaataaatc 12585382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 49028573 - 49028487
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatc 196  Q
    |||||||| ||||||||||||||||||| |||  |||||| |||| | ||||||||||||| ||   || |||||| ||||||||||    
T  49028573 agttatttattggttacattttggtcccataaattattaatgttacaatttggtcccttaagttagtatttgttagccaaataaatc 49028487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 52677861 - 52677804
Alignment:
Q  111 gttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccctt 168  Q
    ||||||||||||||||||||| ||| | |||| |||||| |||||| |||||||||||    
T  52677861 gttatttgttggttacattttagtctcataagttattaatgttataatttggtccctt 52677804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 45667257 - 45667301
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgtta 154  Q
    |||||||||||||||||||||||||| | |||| |||||||||||    
T  45667257 agttatttgttggttacattttggtctcataagttattaacgtta 45667301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 10286436 - 10286494
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccctt 168  Q
    |||||||||||||||||||||| ||||| | || ||||||||||| | |||| ||||||    
T  10286436 agttatttgttggttacattttagtcccattagttattaacgttacaatttgatccctt 10286494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 16067632 - 16067578
Alignment:
Q  112 ttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccc 166  Q
    |||||||||||||||||||| ||| | |||| ||||||||||| | |||||||||    
T  16067632 ttatttgttggttacattttagtctcataagttattaacgttacaatttggtccc 16067578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 36098771 - 36098829
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccctt 168  Q
    |||||||||||||||| ||||| || || |||  ||||||||||||| |||||||||||    
T  36098771 agttatttgttggttatattttagttccataaattattaacgttataatttggtccctt 36098829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 49028289 - 49028347
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccctt 168  Q
    |||||||||||||||||||||| ||||| |||  |||||||||||   |||||||||||    
T  49028289 agttatttgttggttacattttagtcccataaattattaacgttaccatttggtccctt 49028347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 622084 - 622171
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    |||||||||||| ||| |||||| |||  || | ||||||||||||| ||||||||||||| ||   || |||||| ||||||||||||    
T  622084 agttatttgttgattatattttgatcca-tacgttattaacgttataatttggtcccttaaattagtatttgttagccaaataaatcct 622171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 17931314 - 17931374
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaa 170  Q
    |||||||| ||||||||| ||||||||| |||| ||||||||||| |   |||||||||||    
T  17931314 agttatttattggttacaatttggtcccataagttattaacgttacaaaatggtcccttaa 17931374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 25225816 - 25225860
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgtta 154  Q
    |||||||||||||||| ||||||||| | |||| |||||||||||    
T  25225816 agttatttgttggttatattttggtctcataagttattaacgtta 25225860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 11626501 - 11626595
Alignment:
Q  1 ctcatgctaaatttcttttgtataaaagaatagaaaaatgttgctttgctgatttgt-tggtcaaacaaaactagttgttctatttgttacaatt 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11626501 ctcatgctaaatttcttttgtataaaagaatagaaaaatgttgctttgctgatttgtatggtcaaacaaaactagttgttctatttgttacaatt 11626595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 5367725 - 5367637
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    ||||||||||||||||||||||||| || |||| ||||||||||| | ||||||||||||| ||   || |||||| ||||||||||||    
T  5367725 agttatttgttggttacattttggttccataagttattaacgttacaatttggtcccttaagttagtatttgttagccaaataaatcct 5367637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 3659261 - 3659174
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    ||||||||||| |||||||||||||||| |||| ||||||| ||| | ||||||||||||| ||   || |||||| ||||||||||||    
T  3659261 agttatttgttagttacattttggtcccataagttattaac-ttacaatttggtcccttaagttagtatttgttagccaaataaatcct 3659174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 8286814 - 8286874
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaa 170  Q
    |||||||||||||||||||||||||||| ||||  |||||||||| ||||| || ||||||    
T  8286814 agttatttgttggttacattttggtcccttaagtaattaacgttacattttagttccttaa 8286874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 110 - 267
Target Start/End: Original strand, 9379956 - 9380113
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaat 209  Q
    ||||||||||||||||||||||||| ||  ||| |||||||||||  ||||||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  9379956 agttatttgttggttacattttggttccacaagttattaacgttacgttttggtcccttaacttataatatgttagccaaataaatcctttccgttaaat 9380055  T
Q  210 tttatnnnnnnnnctgttaatcttcatcattgaacccagaattcatcacccattcatc 267  Q
    ||| |        |||||||||||||||||| ||||||||||||||||| ||||||||    
T  9380056 tttgtaaaaaaaactgttaatcttcatcattaaacccagaattcatcactcattcatc 9380113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 9380763 - 9380608
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaat 209  Q
    ||||||||||||||||||||||| |||| |||| |||||| ||||  |||||||||||| |||| |||| |||||||||||||||||||| |||||||||    
T  9380763 agttatttgttggttacattttgatcccataagttattaatgttacgttttggtcccttcacttataatatgttagtcaaataaatccttcccgttaaat 9380664  T
Q  210 tttatnnnnnnnnctgttaatcttcatcattgaacccagaattcatcacccattcatc 267  Q
    ||| |        |||||||||||||||||| |||||| |||||||||| | ||||||    
T  9380663 tttgt--aaaaaactgttaatcttcatcattaaacccaaaattcatcactccttcatc 9380608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 34634094 - 34634181
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcc 197  Q
    |||||||||||||||||| ||||||||| |||| ||||||||||| |||||||||| |||| ||  | ||||||||||||||||||||    
T  34634094 agttatttgttggttacaatttggtcccataagttattaacgttacattttggtccattaagttagactctgttagtcaaataaatcc 34634181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 110 - 212
Target Start/End: Complemental strand, 1501141 - 1501039
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaat 209  Q
    |||||||| |||||| |||||||||||| |||  ||||||||||| ||||||||||||||| || || || ||||||||||||||||||| | ||||| |    
T  1501141 agttatttattggtttcattttggtcccataaattattaacgttacattttggtcccttaagttatattccgttagtcaaataaatccttgctgttaact 1501042  T
Q  210 ttt 212  Q
    |||    
T  1501041 ttt 1501039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 23322408 - 23322320
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    ||||||||||||||||||||||||| || |||| ||||||||||| | ||||||||||||| ||   || |||||| ||||||||||||    
T  23322408 agttatttgttggttacattttggttccataagttattaacgttacaatttggtcccttaagttagtatatgttagccaaataaatcct 23322320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 25088430 - 25088518
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    |||||||||||||||||||||||||| | |||  ||||||||||| | ||||||||||||  ||   ||||||||| ||||||||||||    
T  25088430 agttatttgttggttacattttggtcgcataaattattaacgttacaatttggtcccttatgttagtatctgttagccaaataaatcct 25088518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 25146399 - 25146487
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    |||||||||||||||||||||||||| | |||  ||||||||||| | ||||||||||||  ||   ||||||||| ||||||||||||    
T  25146399 agttatttgttggttacattttggtcgcataaattattaacgttacaatttggtcccttatgttagtatctgttagccaaataaatcct 25146487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 5841185 - 5841098
Alignment:
Q  112 ttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctt 199  Q
    |||||||||||||||||||||||||| |||  ||||||||||| | |||||| | |||| ||   || |||||| |||||||||||||    
T  5841185 ttatttgttggttacattttggtcccataaattattaacgttacaatttggttctttaagttagtatttgttagccaaataaatcctt 5841098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 23322124 - 23322182
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccctt 168  Q
    |||||||||||||||||||||| ||||| |||| |||||| |||| | |||||||||||    
T  23322124 agttatttgttggttacattttagtcccataagttattaatgttacaatttggtccctt 23322182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 43183256 - 43183314
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccctt 168  Q
    |||||||||||||||||||||||||||| |||  ||||||| ||| | |||||||||||    
T  43183256 agttatttgttggttacattttggtcccataaattattaacattacaatttggtccctt 43183314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 42792974 - 42793034
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaa 170  Q
    ||||||||||||||| |||||||||||| |||  |||||| |||| | |||||||||||||    
T  42792974 agttatttgttggtttcattttggtcccataaattattaatgttacaatttggtcccttaa 42793034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 20244559 - 20244515
Alignment:
Q  112 ttatttgttggttacattttggtcccgtaagatattaacgttata 156  Q
    |||||||||||||||||||||||||| |||  ||||||| |||||    
T  20244559 ttatttgttggttacattttggtcccataaattattaacattata 20244515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 4734262 - 4734107
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaat 209  Q
    ||||||||||||||||||||||| |||  |||| |||||||||||  ||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  4734262 agttatttgttggttacattttgatcctataagttattaacgttacgttttggtcccttaacttataatctgttagccaaataaatcctttccgttaaat 4734163  T
Q  210 tttatnnnnnnnnctgttaatcttcatcattgaacccagaattcatcacccattcatc 267  Q
    ||| |        |||||||| ||||||||| ||||||||||||||||| | ||||||    
T  4734162 tttgt--aaaatactgttaatattcatcattaaacccagaattcatcactccttcatc 4734107  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 4733332 - 4733485
Alignment:
Q  112 ttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaattt 211  Q
    |||||||||||||||||||||||||| |||| ||||||| |||  |||||||||||||| || ||||| ||||| ||||||||||||||  |||||||||    
T  4733332 ttatttgttggttacattttggtcccataagttattaacattacgttttggtcccttaatttataatccgttagccaaataaatcctttatgttaaattt 4733431  T
Q  212 tatnnnnnnnnctgttaatcttcatcattgaacccagaattcatcacccattcatc 267  Q
    | |        |||||||||||||||||| || | |||||||||||| | ||||||    
T  4733432 tgt--aaaaaactgttaatcttcatcattaaatctagaattcatcactccttcatc 4733485  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 14159232 - 14159326
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgt 204  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||  ||||||||||||||||  || |||||||| ||||||||||||| ||||    
T  14159232 agttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttaactcatactctgttagccaaataaatccttgccgt 14159326  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 4410685 - 4410599
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatc 196  Q
    |||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||| ||  | |||||||| ||||||||||    
T  4410685 agttatttgttggttacaatttggtcccgtaagttattaacgctacattttggtcccttaagttagactctgttagccaaataaatc 4410599  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 14160466 - 14160372
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgt 204  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||  |||||||||||| |||  || |||||||| ||| ||||||||| ||||    
T  14160466 agttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttgactcatactctgttagccaagtaaatccttaccgt 14160372  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 38695198 - 38695110
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||| | ||||||||||||| ||   || |||||| ||||||||||||    
T  38695198 agttatttattggttacattttggtcccataaattattaacgttacaatttggtcccttaagttagtatttgttagccaaataaatcct 38695110  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 18166661 - 18166719
Alignment:
Q  112 ttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaa 170  Q
    ||||||||||||||||||||| || | |||| ||||||||||| | |||||||||||||    
T  18166661 ttatttgttggttacattttgatctcataagttattaacgttacaatttggtcccttaa 18166719  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 4409188 - 4409246
Alignment:
Q  112 ttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaa 170  Q
    ||||||||| |||||| ||||||| | |||| |||||||||||  ||||||||||||||    
T  4409188 ttatttgttagttacaatttggtctcataagttattaacgttacgttttggtcccttaa 4409246  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 38694914 - 38694972
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccctt 168  Q
    |||||||||||||||||||||| ||||| |||  |||||||||||   |||||||||||    
T  38694914 agttatttgttggttacattttagtcccataaattattaacgttaccatttggtccctt 38694972  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 42963078 - 42963020
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccctt 168  Q
    |||||||||||||||||||||| ||| | |||| ||||||||||| | |||||| ||||    
T  42963078 agttatttgttggttacattttagtctcataagttattaacgttacaatttggtgcctt 42963020  T

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Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 112 - 214
Target Start/End: Original strand, 18470167 - 18470269
Alignment:
Q  112 ttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaattt 211  Q
    |||||||||||||||||||||| | | |||| |||||| ||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18470167 ttatttgttggttacattttggccacataagttattaatgttaggttttggtcccttaacttataatctgttagtcaaataaatcctttccgttaaattt 18470266  T
Q  212 tat 214  Q
    |||    
T  18470267 tat 18470269  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 110 - 212
Target Start/End: Complemental strand, 18471816 - 18471714
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaat 209  Q
    |||||| ||||||||||||||||||| | |||| ||||||| |||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||    
T  18471816 agttatctgttggttacattttggtctcataagttattaacattatattttggtcccttaacttataatctgttagccaaataaatcatttccgttaaat 18471717  T
Q  210 ttt 212  Q
    |||    
T  18471716 ttt 18471714  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 8328221 - 8328323
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgttaaat 209  Q
    |||||||| || |||| ||||||||| |  ||| |||||||||||  |||| |||||||||||| |||| |||||| |||||||||||||||||||||||    
T  8328221 agttatttattagttagattttggtctcacaagttattaacgttacgttttagtcccttaacttataatatgttagccaaataaatcctttccgttaaat 8328320  T
Q  210 ttt 212  Q
    |||    
T  8328321 ttt 8328323  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 8594089 - 8594176
Alignment:
Q  111 gttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    ||||||||||| ||| ||||||||||| |||| | ||||| |||  |||||||||||||||||||||| |||||| ||| ||||||||    
T  8594089 gttatttgttgattatattttggtcccataagttcttaacattacgttttggtcccttaacttgtaatttgttagccaattaaatcct 8594176  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 4265286 - 4265198
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    ||||| |||| |||||||||||| |||| |||| ||||||||||| | |||||||| |||| ||   ||||||| | ||||||||||||    
T  4265286 agttagttgtcggttacattttgatcccataagttattaacgttacaatttggtccattaagttagtatctgtttgccaaataaatcct 4265198  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 8341924 - 8342001
Alignment:
Q  176 aatctgttagtcaaataaatcctttccgttaaattttatnnnnnnnnctgttaatcttcatcattgaacccagaattcat 255  Q
    ||||| |||| |||||||||| ||||||||||||||| |        |||||||||||||||||| ||||||||||||||    
T  8341924 aatctattagccaaataaatcatttccgttaaattttgtaaaaaa--ctgttaatcttcatcattaaacccagaattcat 8342001  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 8329091 - 8329038
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggt 163  Q
    |||||||||||||||||||||||||| |  ||| |||||||||||  |||||||    
T  8329091 agttatttgttggttacattttggtctcaaaagttattaacgttacgttttggt 8329038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 18470918 - 18470955
Alignment:
Q  242 aacccagaattcatcacccattcatcttcatcattaaa 279  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  18470918 aacccaaaattcatcacccgttcatcttcatcattaaa 18470955  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 8905666 - 8905710
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgtta 154  Q
    |||||||||||||||||||||||||| | |||| |||||| ||||    
T  8905666 agttatttgttggttacattttggtctcataagttattaatgtta 8905710  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 16907956 - 16908050
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcctttccgt 204  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||  || |||||||| |||||||||  |||||||    
T  16907956 agttatttgttggttacgttttggtcccataagttattaacgttatgttttggtcccttaactcatactctgttagccaaataaattatttccgt 16908050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 27864825 - 27864913
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| | ||||||||||||| ||   || |||||| ||||||||||||    
T  27864825 agttatttgttggttacattttggtcccataagttattaacgttacaatttggtcccttaagttagtatttgttagccaaataaatcct 27864913  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 24107177 - 24107265
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| | ||||||| ||||| ||    |||||||| ||||||||||||    
T  24107177 agttatttgttggttacattttggtcccataagttattaacgttacaatttggtcacttaagttagtttctgttagccaaataaatcct 24107265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 38758917 - 38758860
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccct 167  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||||||    
T  38758917 agttatttgttggttacattttggtcccataagttatcaacgttataatttggtccct 38758860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 31596797 - 31596740
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgtta-tattttggtccc 166  Q
    |||||||||||||||||||||||||||| |||| |||||||||||  |||||||||||    
T  31596797 agttatttgttggttacattttggtcccataagttattaacgttaccattttggtccc 31596740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 27865108 - 27865048
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaa 170  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||| | |||||||| ||||    
T  27865108 agttatttgttggttacattttagtcccataagttattaacgttacaatttggtcctttaa 27865048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 46684124 - 46684184
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaa 170  Q
    ||||||||||||||||||||||| |||| |||| ||||||| |||  ||||||||||||||    
T  46684124 agttatttgttggttacattttgatcccataagttattaacattacgttttggtcccttaa 46684184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 3171515 - 3171573
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccctt 168  Q
    |||||||||||||||||||||| ||||| |||| |||||| |||| | |||||||||||    
T  3171515 agttatttgttggttacattttagtcccataagttattaatgttacaatttggtccctt 3171573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 38758634 - 38758692
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccctt 168  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||| | ||| |||||||    
T  38758634 agttatttgttggttacattttagtcccataagttattaacgttacaatttagtccctt 38758692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 18026161 - 18026117
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgtta 154  Q
    |||||||||||||||||||||| ||||| |||| |||||||||||    
T  18026161 agttatttgttggttacattttagtcccataagttattaacgtta 18026117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 19860517 - 19860577
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaa 170  Q
    |||||||| ||||||||||||| ||||| |||| ||||||||||| | |||||||| ||||    
T  19860517 agttatttattggttacattttagtcccataagttattaacgttacaatttggtcctttaa 19860577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 24107461 - 24107405
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccc 166  Q
    ||||| |||||||||||||||| ||||| |||| ||||||||||| | |||||||||    
T  24107461 agttaattgttggttacattttagtcccataagttattaacgttacaatttggtccc 24107405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 21792245 - 21792300
Alignment:
Q  112 ttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccct 167  Q
    ||||| |||||||||||||| ||||| |||| ||||||||||| | ||||||||||    
T  21792245 ttattggttggttacattttagtcccataagttattaacgttacaatttggtccct 21792300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 21792427 - 21792373
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtc 164  Q
    |||||||||||| ||||||||||||||  |||| ||||||||||| | |||||||    
T  21792427 agttatttgttgtttacattttggtcctctaagttattaacgttacaatttggtc 21792373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 416
Target Start/End: Complemental strand, 53245423 - 53245385
Alignment:
Q  378 ttgtgctatgaatgaaaagagatgaagttgttattgttg 416  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  53245423 ttgtgctatgaatgaaaagagatgaggttgttgttgttg 53245385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 14812453 - 14812497
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgtta 154  Q
    |||||||| || |||||||||||||||| |||| |||||||||||    
T  14812453 agttattttttagttacattttggtcccataagttattaacgtta 14812497  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 18025906 - 18025938
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaag 142  Q
    |||||||||||||||||||||||||||| ||||    
T  18025906 agttatttgttggttacattttggtcccataag 18025938  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 19860799 - 19860712
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    |||||||| ||||||||||||||||| |  ||| ||||||| ||| | |||||||| |||| ||  ||||| |||| ||||||||||||    
T  19860799 agttatttattggttacattttggtctc-aaagttattaacattacaatttggtcctttaagttaaaatctattagccaaataaatcct 19860712  T

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Target: scaffold0069 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 19921 - 20009
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatcct 198  Q
    |||||||||||||||||||||||||| | |||| ||||||||||| | ||||||||||||| ||   ||||||||| ||||||||||||    
T  19921 agttatttgttggttacattttggtcgcataagttattaacgttacaatttggtcccttaagttagtatctgttagccaaataaatcct 20009  T

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Target: scaffold0008 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 266930 - 266844
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatc 196  Q
    |||||||||||||||||||||||||| | |||| ||||||| ||||| ||||||||||||| ||   ||||||||| ||||||||||    
T  266930 agttatttgttggttacattttggtcacataagttattaaccttataatttggtcccttaagttagtatctgttagccaaataaatc 266844  T

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Target: scaffold0008; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 266647 - 266705
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtccctt 168  Q
    |||||||||||||||||||||| ||||  |||| |||||| |||||| |||||||||||    
T  266647 agttatttgttggttacattttagtccgataagttattaatgttataatttggtccctt 266705  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 93657 - 93743
Alignment:
Q  110 agttatttgttggttacattttggtcccgtaagatattaacgttatattttggtcccttaacttgtaatctgttagtcaaataaatc 196  Q
    ||||||||||| |||||||||||||||| |||  ||||||||||| | ||| ||||||||| ||   || |||||| ||||||||||    
T  93657 agttatttgttagttacattttggtcccataaattattaacgttacaatttagtcccttaagttactatttgttagccaaataaatc 93743  T

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