View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3431_low_10 (Length: 249)
Name: NF3431_low_10
Description: NF3431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3431_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6967490 - 6967250
Alignment:
| Q |
1 |
tagttgatcttgattcttgaatcagaattgcatgtctttttcatagtacactgtttcagaaacaggttggacttttgaccacatgcaaaagacaacatag |
100 |
Q |
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| T |
6967490 |
tagttgatcttgattcttgaatcagacttgcatgtctttttcatagtacactgttccagaaacaggttggacttttgaccacatgcaaaagacaacatag |
6967391 |
T |
|
| Q |
101 |
ccacagttgcttgcttgtcacactacttgtattgtcatgtaatgtggtgaccatgagtttagttaagtttgtagaattcatttaaactgaattagaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6967390 |
ccacagttgcttgcttgtcacactacttgtattgtcatgtaatgtggtgaccatgagtttagttaagtttgtagaattcatttaaactgatttagaacaa |
6967291 |
T |
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| Q |
201 |
attaatgactattt-cataaattatagtgcccaaatctgtg |
240 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |
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| T |
6967290 |
attaatgactatttccataaattatagtgcccaaatctgtg |
6967250 |
T |
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