View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3431_low_11 (Length: 209)
Name: NF3431_low_11
Description: NF3431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3431_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 8357536 - 8357713
Alignment:
| Q |
16 |
caaaggactctctacctcttgttcaacatctcttcctcctatatgcattaatctcaccgagtatttgctcgaaccccgacaagaaataataacaaacatg |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8357536 |
caaaagactctctacctcttgttcaacatctcttcctcctatatgcattaatctcaccgagtatttgctcgaaccccgacaagaaataataacaaacatg |
8357635 |
T |
|
| Q |
116 |
acacaaaattttaaggtgcatcatcttctagttgactatttcgaagctagcttagaagcatgtcgttgttgtgacaca |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8357636 |
acacaaaattttaaggtgcatcatcttctagttgactatttcgaagctagcttagaagcatgtcgttgttgtgacaca |
8357713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 28594020 - 28593872
Alignment:
| Q |
45 |
ctcttcctcctatatgcattaatctcaccgagtatttgctcgaaccccgacaagaaataataacaaacatgacacaaaattttaaggtgcatcatcttct |
144 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |||||||||||||||||| ||||| ||||||||||||| || ||| |||||||||||| ||||||| |
|
|
| T |
28594020 |
ctcttcctcctatatgcctgaatctcaccgagtctttgctcgaaccccgacatgaaatcataacaaacatgagacgaaactttaaggtgcatgatcttct |
28593921 |
T |
|
| Q |
145 |
agttgactatttcgaagctagcttagaagcatgtcgttgttgtgacaca |
193 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
28593920 |
agttaactatttcgatgctagcttagaagcaagtcgttgttgtgacaca |
28593872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 53447180 - 53447246
Alignment:
| Q |
125 |
tttaaggtgcatcatcttctagttgactatttcgaagctagcttagaagcatgtcgttgttgtgaca |
191 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||| ||||||||||||| || |||||| |||| |
|
|
| T |
53447180 |
tttaaggtgcatcatcttctagtggactactttgaagccagcttagaagcatatctttgttgcgaca |
53447246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University