View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3431_low_3 (Length: 634)
Name: NF3431_low_3
Description: NF3431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3431_low_3 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 1 - 617
Target Start/End: Original strand, 150483 - 151099
Alignment:
| Q |
1 |
gtttaatagagagcattcgcatattggagagcgtggatattcgagggtagtgttttgcaatgaaccagagagctttgaagaaggaatcaaaaagtatgca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
150483 |
gtttaatagagagcattcgcatattggagagcgtggatattcgagggtagtgttttgcaatgaaccagagagctttgaagaaggaattaaaaagtatgca |
150582 |
T |
|
| Q |
101 |
gataattcagtgagctctacaaagtatactcttgctacatttttgccgaagtcattgtttgaacagtttaggagagtggctaatttctattttttggtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150583 |
gataattcagtgagctctacaaagtatactcttgctacatttttgccgaagtcattgtttgaacagtttaggagagtggctaatttctattttttggtaa |
150682 |
T |
|
| Q |
201 |
ctggtactttgtcatttacaaagcttgctccttatactgctgttagtgctatccttcctttggttgttgttattggtgctactatggtgaaagagggtat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150683 |
ctggtactttgtcatttacaaagcttgctccttatactgctgttagtgctatccttcctttggttgttgttattggtgctactatggtgaaagagggtat |
150782 |
T |
|
| Q |
301 |
cgaagattggcgtcgcaaaaagcaggtaggtactacattatcatcaccaattctatttgttttcaagggtgtaattatgaagctctttgttttttaattc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150783 |
cgaagattggcgtcgcaaaaagcaggtaggtactacattatcatcaccaattctatttgttttcaagggtgtaattatgaagctctttgttttttaattc |
150882 |
T |
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| Q |
401 |
tagtgtttgttgacttttttcgcttatatttcaagttaggtttattatatgagttgaagatttggtatgatgagagtgacgtaaaatacaagaacgtcta |
500 |
Q |
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| T |
150883 |
tagtgtttgttgacttttttcgcttatatttcaagttagatttattatatgagttgaagatttggtatgatgagagtgacgtaaaatacaagaacgtcta |
150982 |
T |
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| Q |
501 |
atatggtttcttatgtactcnnnnnnnctgctacaatatttcctacatgtgtattagacaaaattaatatgtttccttcattttaagttctgttatcatg |
600 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150983 |
atatggtttcttatgtactctttttttctgctacaatatttcctacatgtgtattagacaaaattaatatgtttccttcattttaagttctgttatcatg |
151082 |
T |
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| Q |
601 |
tgcatagtgtataattt |
617 |
Q |
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||||||||||||||||| |
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| T |
151083 |
tgcatagtgtataattt |
151099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 97 - 328
Target Start/End: Complemental strand, 29593156 - 29592925
Alignment:
| Q |
97 |
tgcagataattcagtgagctctacaaagtatactcttgctacatttttgccgaagtcattgtttgaacagtttaggagagtggctaatttctattttttg |
196 |
Q |
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||||||||||| || || |||||||| |||||| ||| || || || || || ||| | |||||||||||||||||||| || ||||||||||||||| |
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| T |
29593156 |
tgcagataattatgttagatctacaaaatatactgctgcaactttctttccaaaatcactttttgaacagtttaggagagttgcaaatttctattttttg |
29593057 |
T |
|
| Q |
197 |
gtaactggtactttgtcatttacaaagcttgctccttatactgctgttagtgctatccttcctttggttgttgttattggtgctactatggtgaaagagg |
296 |
Q |
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|| |||||| |||| | || ||||| ||||||||||||| ||||||| |||||| |||||| | |||||||||||||| || ||||| |||||||| | |
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| T |
29593056 |
gttactggtgttttggctttcacaaaacttgctccttatagagctgttactgctattcttcctcttgttgttgttattggagcaactattgtgaaagaag |
29592957 |
T |
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| Q |
297 |
gtatcgaagattggcgtcgcaaaaagcaggta |
328 |
Q |
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|||| |||||||||||| | |||||||||||| |
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| T |
29592956 |
gtattgaagattggcgtaggaaaaagcaggta |
29592925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 95 - 328
Target Start/End: Original strand, 13704628 - 13704861
Alignment:
| Q |
95 |
tatgcagataattcagtgagctctacaaagtatactcttgctacatttttgccgaagtcattgtttgaacagtttaggagagtggctaatttctattttt |
194 |
Q |
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||||| |||||||| || || || ||||| |||||| ||||||| || || || |||||||||||||| ||||||||||| || |||||||||| ||| |
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| T |
13704628 |
tatgctgataattctgttaggtcaacaaaatatacttttgctactttcttacctaagtcattgtttgagcagtttaggagggtagctaatttctttttcc |
13704727 |
T |
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| Q |
195 |
tggtaactggtactttgtcatttacaaagcttgctccttatactgctgttagtgctatccttcctttggttgttgttattggtgctactatggtgaaaga |
294 |
Q |
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| || |||||| || | || ||||| ||||||||||||||||||||||||||||| |||||||| | |||| | ||||||| ||||||||||| || |
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| T |
13704728 |
ttgttgctggtatcttagctttcacaaaacttgctccttatactgctgttagtgctattcttcctttagctgttatagttggtgcaactatggtgaagga |
13704827 |
T |
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| Q |
295 |
gggtatcgaagattggcgtcgcaaaaagcaggta |
328 |
Q |
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| T |
13704828 |
aggtattgaagattttcgtcggaaaaaacaggta |
13704861 |
T |
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