View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3431_low_4 (Length: 550)
Name: NF3431_low_4
Description: NF3431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3431_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 23 - 534
Target Start/End: Complemental strand, 53039709 - 53039198
Alignment:
| Q |
23 |
atgagttttctggtgggatatggaaagaatttcccacaattcgtgcatcacaggggagcttcatttcctgctaatgcgaaaactggttgcaaggatgggt |
122 |
Q |
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| T |
53039709 |
atgagttttctggtgggatatggaaagaatttcccacaattcgtgcatcacaggggagcttcaattcctgctaatgcgaaaactggttgcaaggacgggt |
53039610 |
T |
|
| Q |
123 |
ggcagtggcttgactcatccgatccgaatcccaacgtagctactggagcacttgttggtggacctttcttaaatgagacttacattgattctaggaacaa |
222 |
Q |
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| T |
53039609 |
ggcagtggcttgactcatccgatccgaatcccaatgtagctactggagcacttgttggtggacctttcttaaatgagacttacattgattctaggaacaa |
53039510 |
T |
|
| Q |
223 |
ttctatgcaaggagaaccaagcacatataacagtgctgtcatagttggtctcttatcaagtttagtcaccacatcttcagcccttcaatccttctcctaa |
322 |
Q |
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| T |
53039509 |
ttctatgcaaggagaaccaagcacatataacagtgctgtcatagttggtctcttatcaagtttagtcaccacatcttcggcccttcaatccttctcctaa |
53039410 |
T |
|
| Q |
323 |
actatagtatgtagcttctccatattcaattccactcaaaagaagttgcgatgcggatttaagttttatggctttattcatttccttatcatcacgtatt |
422 |
Q |
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| T |
53039409 |
actatagtatgtagcttctccatattcaattccactcaaaagaagttgcgacgcggatttaagttttatggctttattcatttccttatcatcacgtatt |
53039310 |
T |
|
| Q |
423 |
attagtgtatggatcgtgatactgtaactatacaatatattttgagtgtgaaccgtggtgtctggataggttagtcattaattaatgtatacaggtgaag |
522 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53039309 |
attagtgtatggatcgtgatactgtaactatacaatatattttgagtgtgagccgtggtgtctggataggttagtcattaattaatgtatacaggtgaag |
53039210 |
T |
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| Q |
523 |
tttgattctctg |
534 |
Q |
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|||||||||||| |
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| T |
53039209 |
tttgattctctg |
53039198 |
T |
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