View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3431_low_7 (Length: 437)
Name: NF3431_low_7
Description: NF3431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3431_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 6967721 - 6968138
Alignment:
| Q |
1 |
tcatgcactcattgagaaattctcagagaaattagccaacttttgttacccttttgttgaggttagattctttgagaacattggtgattatatgagaacc |
100 |
Q |
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| T |
6967721 |
tcatgcactcattgagaaattctcagagaaattagccaacttttgttacccttttgttgaggttagattctttgagaacattggtgattatatgagaacc |
6967820 |
T |
|
| Q |
101 |
aatgaagctttcttatacattgaaaactacttaacatctaaatcaaccaaccaagcaaagaaactccaaggtgaatatgtgagaaagtctttagttctaa |
200 |
Q |
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| T |
6967821 |
aatgaagctttcttatacattgaaaactacttaacatctaaatcaaccaaccaagcaaagaaactccaaggtgaatatgtgagaaagtctttagttctaa |
6967920 |
T |
|
| Q |
201 |
agatggatgaaagacaaaagttttatgatgagtttgaaggggttaagtttgtttggagtctaatcaagattgtccccaacacaaattctgtttcattcta |
300 |
Q |
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| T |
6967921 |
agatggatgaaagacaaaagttttatgatgagtttgaaggggttaagtttgtttggagtctaatcaagattgtccccaacacaaattctgtttcattcta |
6968020 |
T |
|
| Q |
301 |
tccagcttcagacaaaagattctaccttctcacatttcatcgtagtcatcgcgatttcgttgagaaatcttaccttaaccatgttttggaacaaggtaaa |
400 |
Q |
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| T |
6968021 |
tccagcttcagacaaaagattctaccttctcacatttcatcgtagtcatcgcgatttcgttgagaaatcttaccttaaccatgttttggaacaaggtaaa |
6968120 |
T |
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| Q |
401 |
gaaattggtctaagtaag |
418 |
Q |
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| T |
6968121 |
gaaattggtctaagtaag |
6968138 |
T |
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