View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3431_low_8 (Length: 395)
Name: NF3431_low_8
Description: NF3431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3431_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 52832599 - 52832235
Alignment:
| Q |
15 |
cacagaaacagaggaaactccgaattttattgtccactttccttacattgttaaacaaaggtcacatgtaacatcgccacacttgttacttcttttccct |
114 |
Q |
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| T |
52832599 |
cacagaaacagaggaaactccgaattttattgtccactttccctacattgttaaacaaaggtcgcatgtaacaccaccacccttgttacttcttttccct |
52832500 |
T |
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| Q |
115 |
ttttgcacccatttatgattgattatacacccttctcttgtagcagaaattaaagaacccaactcctccacattgtagtaacatacattttcggaatggc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52832499 |
ttttgcacccatttatgattgattatacacccttctcttgtagcagaaattaaagaacccaactcctccacattgtagtaacatacattttcggaatggc |
52832400 |
T |
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| Q |
215 |
gaggaaaaattattcaccatcttcatctgcattgcgttatgttcaacctcgttattacgcaaaaagacccaaacgttttgcatttctcattttcctttta |
314 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52832399 |
gaggaaaaattattcatcatcttcatctgcattgcgttatgttcaacctcgttattacgcaaaaagacccaaacgttttgcatttctcattttcctttta |
52832300 |
T |
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| Q |
315 |
atctctcttgcatggtttgtctatgatcgtcagttactcaatagagaacaccaacaggatatttt |
379 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||| |
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| T |
52832299 |
atctctcttgcatggtttgtctatgatcgtcaattactcagtagagaacaccaacaagatatttt |
52832235 |
T |
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