View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3431_low_9 (Length: 272)
Name: NF3431_low_9
Description: NF3431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3431_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 6633652 - 6633889
Alignment:
| Q |
21 |
aacagatgagaggaaatatgagtgtagtagcagtattcatagcaacagtaacatttcaaatcgcaataagtccacccggtggtgttaggtctgttgaaga |
120 |
Q |
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| T |
6633652 |
aacagatgagaggaaatatgagtgtagtagcagtattcatagcaacattaacatttcaaatggcaataagtccacccggtggtgttaggtctgttgaaga |
6633751 |
T |
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| Q |
121 |
gaacaacaacaaagctcaaaagggaaatatattatgtgctgacaatgccctttcggagctatgtccgggggaagctgctttggccattgtataccctgct |
220 |
Q |
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| T |
6633752 |
gaaca---acaaagctcaaaagggaaatatattatgtgctgacaatgccctttcggagctatgtccgggggaagctgctttggccattgtataccctgct |
6633848 |
T |
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| Q |
221 |
gactattatgacttccttttttagaacacaatatgtttcat |
261 |
Q |
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| T |
6633849 |
gactattatgacttccttctttggaacacaatatgtttcat |
6633889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 6807667 - 6807904
Alignment:
| Q |
21 |
aacagatgagaggaaatatgagtgtagtagcagtattcatagcaacagtaacatttcaaatcgcaataagtccacccggtggtgttaggtctgttgaaga |
120 |
Q |
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| T |
6807667 |
aacagatgagaggaaatatgagtgtagtagcagtattcatagcaacattaacattttaaatggcaataagtccacccggtggtgttaggtctgttgaaga |
6807766 |
T |
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| Q |
121 |
gaacaacaacaaagctcaaaagggaaatatattatgtgctgacaatgccctttcggagctatgtccgggggaagctgctttggccattgtataccctgct |
220 |
Q |
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| T |
6807767 |
g---aacaacaaagctcaaaaaggaaatatattatgtgctaacgatacccgtttggagctatgtccgggtgaagctgctttggccgttgtataccctgaa |
6807863 |
T |
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| Q |
221 |
gactattatgacttccttttttagaacacaatatgtttcat |
261 |
Q |
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| T |
6807864 |
cactattctgacttcctttattggaacacaacatgtttcat |
6807904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 6835759 - 6835843
Alignment:
| Q |
177 |
agctatgtccgggggaagctgctttggccattgtataccctgctgactattatgacttccttttttagaacacaatatgtttcat |
261 |
Q |
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| T |
6835759 |
agctatgtccgggtaatgctgtcttagccattgtataccctgatgactatgctgacttccttttttggaacacaatatgtttcat |
6835843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 6835608 - 6835691
Alignment:
| Q |
26 |
atgagaggaaatatgagtgtagtagcagtattcatagcaacagtaacatttcaaatcgcaataagtccacccggtggtgttagg |
109 |
Q |
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| T |
6835608 |
atgagggggaatatgagtatagtagcaatattcatagcaacaataacgtttcaaatggctataaatccacccggtggcgttagg |
6835691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 6632448 - 6632505
Alignment:
| Q |
24 |
agatgagaggaaatatgagtgtagtagcagtattcatagcaacagtaacatttcaaat |
81 |
Q |
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| T |
6632448 |
agatgagagggaattttagtgtagtagcaatattcatagcaacaataacatttcaaat |
6632505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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