View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3433_high_1 (Length: 367)
Name: NF3433_high_1
Description: NF3433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3433_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 31850859 - 31850970
Alignment:
| Q |
2 |
aaaccaaaacgcaacgataattaggaaatgtatgactgaaatagcaaagtaattatatttaaaatgttctcatattaaatgtttcttttgtaaaattata |
101 |
Q |
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| T |
31850859 |
aaaccaaaacgcaacgataattaagaaatgtatgactgaaatagcaaagtaattatatttaaaatgttctcatattaaatgtttcttttgtaaaattata |
31850958 |
T |
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| Q |
102 |
tattaaaatgtt |
113 |
Q |
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| T |
31850959 |
tattaaaatgtt |
31850970 |
T |
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Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 31851169 - 31851263
Alignment:
| Q |
260 |
ttgcatacacataccatgacctaatttacataacctccattgtcaccacccttttaaaaccctattcactcatcagcacgaccacgctcctcctt |
354 |
Q |
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| T |
31851169 |
ttgcatacacataccatgacctaatttacataacctccattgtcaccacccttttaaaaccctattcactcatcagcacgaccatgctcctcctt |
31851263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 31851066 - 31851138
Alignment:
| Q |
187 |
gcttacattaacttagatgtaatgtaactctcatgatacaacgcatatagctatgttgccataacaagcaaca |
259 |
Q |
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| T |
31851066 |
gcttacattaacttagatgtaatgtaactctcatgatacaacacatatagttatgttgccataacaagcaaca |
31851138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 31850979 - 31851034
Alignment:
| Q |
99 |
atatattaaaatgttaaagtcacataattgagaactaaattggatgttatatgctgt |
155 |
Q |
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| T |
31850979 |
atatattaaaatgttaa-gtcacataattgagaactaaattggatgttttatgctgt |
31851034 |
T |
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