View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3433_low_2 (Length: 250)
Name: NF3433_low_2
Description: NF3433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3433_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 46865061 - 46864822
Alignment:
| Q |
1 |
tttcagtcaagtaacaaacacaaactttcaaccatccattataaaattgagatgattaactattttaatttatgaaatctagacatttcaatcaaataga |
100 |
Q |
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| T |
46865061 |
tttcagtcaagtaacaaacacaaactttcaaccatccattataaaattgagatgattaactattttaatttatgaaatctagacatttcaatcaaataga |
46864962 |
T |
|
| Q |
101 |
aattcctaatggggttgacaggaaaatacagaacttcattcaagttatatgtaacacagtgacagtattgcccatggaggatggtgaaatataatgaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
46864961 |
aattcctaatggggttgacaggaaaatacagaacttcattcaagttatatgtaacacagtgacggtattgtccatggaggatggtgaaatataatgaaag |
46864862 |
T |
|
| Q |
201 |
gccaaaaatacaacatataaacacaccattgtggcctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
46864861 |
gccaaaaatacaacatataaacacaccattgtggcctatg |
46864822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 25760632 - 25760572
Alignment:
| Q |
180 |
gatggtgaaatataatgaaaggccaaaaatacaacatataaacacaccattgtggcctatg |
240 |
Q |
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||||||| ||||| || |||||||||||| || |||| |||||||||||||||||||||| |
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| T |
25760632 |
gatggtggaatatggtggaaggccaaaaatccaccatacaaacacaccattgtggcctatg |
25760572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 48791542 - 48791498
Alignment:
| Q |
196 |
gaaaggccaaaaatacaacatataaacacaccattgtggcctatg |
240 |
Q |
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|||||||||||| | || ||||||||||||||||||||||||||| |
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| T |
48791542 |
gaaaggccaaaagtccaccatataaacacaccattgtggcctatg |
48791498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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