View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_high_12 (Length: 400)
Name: NF3434_high_12
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 47477002 - 47477369
Alignment:
| Q |
20 |
aagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctaca |
119 |
Q |
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| T |
47477002 |
aagttcacctacctatagcacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctaca |
47477101 |
T |
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| Q |
120 |
agaccagcttataaaggtaggggtgtctcccatttataatttgagactctcaacaaataatctaaccatatcaacatgtatatgtaacgtgttgccgtgt |
219 |
Q |
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| T |
47477102 |
agaccagtttataaaggtaggggtgtctcccatttataatttgagactctcaacaaataatctaaccatatcaacatgtatatgtaacttgttgccgtgt |
47477201 |
T |
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| Q |
220 |
actatgctcaaatcaaatactagttttacataggaagaaatatccttaactgtatcctcaataggcacggttgtatcgactctgtgctgataatagagat |
319 |
Q |
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| T |
47477202 |
actatgctcaaatcaaatactagttttacataggaagaaatatccttaactgtatcctcaataggcacggttgtatcgactctgtgctgataatagagat |
47477301 |
T |
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| Q |
320 |
caatgtattcaacatcgagacgtttcaagctagcttcgcagcttgaacgcacatactccggtgaacct |
387 |
Q |
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| T |
47477302 |
caatgtattcaacattgagacgtttcaagctagcttcgcagcttgaacgcacatactccggtgaacct |
47477369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 47473704 - 47473874
Alignment:
| Q |
20 |
aagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctaca |
119 |
Q |
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| T |
47473704 |
aagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattgtcaataactcaaccctaga |
47473803 |
T |
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| Q |
120 |
agaccagcttataaaggtaggggtgtctcccatttataatttgagactctcaacaaataatctaaccatat |
190 |
Q |
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| T |
47473804 |
aaaccagcttatcaaggtatgggagtctcccatttataatttgggactctcaacaaataatgtaagcatat |
47473874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 250 - 386
Target Start/End: Original strand, 47473898 - 47474034
Alignment:
| Q |
250 |
taggaagaaatatccttaactgtatcctcaataggcacggttgtatcgactctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagc |
349 |
Q |
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| T |
47473898 |
taggaagaaatatccttaactgtatcctcaatagacacagaagtatcaattctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagc |
47473997 |
T |
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| Q |
350 |
tagcttcgcagcttgaacgcacatactccggtgaacc |
386 |
Q |
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| T |
47473998 |
tagcttcacaacacgagcgcacgtactcaggtgaacc |
47474034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 271 - 387
Target Start/End: Original strand, 47486544 - 47486660
Alignment:
| Q |
271 |
gtatcctcaataggcacggttgtatcgactctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagctagcttcgcagcttgaacgca |
370 |
Q |
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|||||||| |||||||| | |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
47486544 |
gtatcctctataggcacagatgtatccactctgtgctgataatacagatcaatgtattcgacatcgagacgtttcaagctagcttcgcagcatgaacgca |
47486643 |
T |
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| Q |
371 |
catactccggtgaacct |
387 |
Q |
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|||| |||||||||||| |
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| T |
47486644 |
cataatccggtgaacct |
47486660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 47486419 - 47486483
Alignment:
| Q |
20 |
aagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataat |
84 |
Q |
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|||||||||||||| ||| | || |||||||||||||| ||||||||| |||||| || ||||| |
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| T |
47486419 |
aagttcacctacctgtaatagaagaaacttgttaacaatgcatctagtgtaataagtcagataat |
47486483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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