View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_high_17 (Length: 328)
Name: NF3434_high_17
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 28472622 - 28472320
Alignment:
| Q |
18 |
aaacctaggacacccccacacacaatatcattgttgtgttctgccctatctcatgtatttgcttaaatatctcacttctcttaccattttatatttcctt |
117 |
Q |
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| T |
28472622 |
aaacctaggacacccccacacacaatatcattgttgtgttctgccctatctcatgtatttgcttaaatatctcacttctcttaccattttatatttcctt |
28472523 |
T |
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| Q |
118 |
agattcaattcactatattttctataattcagttacaatcttttcttacatctcttcctatataaacaagaaacaactcaaaaagtttccatggattcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28472522 |
agattcaattcactatattttctataattcagttacaatcttttcttacatctcttcctatataaacaagaaacaactcaaaaagtttccatggattcca |
28472423 |
T |
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| Q |
218 |
attcaaagtgctcaagatttcaaatccctcttggatcaatggcaagaagtatgtttttcaaagcattacttcttgcctctgctatttccatcgtttctct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28472422 |
attcaaagtgctcaagatttcaaatccctcttggatcaatggcaagaagtatgtttttcaaagcattacttcttgcctctgctatttccatcgtttctct |
28472323 |
T |
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| Q |
318 |
gct |
320 |
Q |
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||| |
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| T |
28472322 |
gct |
28472320 |
T |
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