View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3434_high_20 (Length: 306)
Name: NF3434_high_20
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_high_20 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 5302031 - 5302319
Alignment:
| Q |
18 |
cttacataggtattaagctgtctgatgaaacttgagaagttattatggttaaagtatcgagacaacaaatctttttcaaaatcttctttattccaaacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302031 |
cttacataggtattaagctgtctgatgaaacttgagaaattattatggttaaagtatcgagacaacaaatctttttcaaaatcttctttattccaaacaa |
5302130 |
T |
|
| Q |
118 |
taaaacttttatcagtagcaccccaagaaacaatggcatctgttgaaggatcttcaaccatattataagtcttggtgagaaaaggaggcaccttatcgga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5302131 |
taaaacttttatcagtagcaccccaagaaacaatggcatccgttgaaggatcttcaaccatattataagtcttagtgagaaaaggaggcaccttatcgga |
5302230 |
T |
|
| Q |
218 |
actactaccctgagcttcttccatcattcccaaaataaccctcaaactcaaaattacaattttcagtacacaatgacttctcaagactc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
5302231 |
actactaccctgagcttcttccatcattcccaaaataactctcaaacccaaaattacaattttcaatacacaatgactcctcaagactc |
5302319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 279
Target Start/End: Original strand, 19100382 - 19100614
Alignment:
| Q |
44 |
gaaacttgagaagttattatggttaaagtatcgagacaacaaatctttttcaaaatcttctttattccaaacaataaaacttttatcagtagcaccccaa |
143 |
Q |
| |
|
||||||||||||||||||||| ||||||| || || |||||||||||| ||||||| | ||| ||||||| |||||| || || ||| || | | |
|
|
| T |
19100382 |
gaaacttgagaagttattatgcttaaagtgtctaggtaacaaatcttttacaaaatcgaatggatttgaaacaatgaaacttctaccattagaactctag |
19100481 |
T |
|
| Q |
144 |
gaaacaatggcatctgttgaaggatcttcaaccatattataagtcttggtgagaaaaggaggcaccttatcggaactactaccctgagcttcttccatca |
243 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||| | ||| || || | | |||| |||| | || |||||| |||||| ||| | |||||||| | |
|
|
| T |
19100482 |
gaaacaatggaattagttgaagaatcttcaaccatttcatatgtgtttttcaaaaaacgaggaatctgatcgga---actaccatgaccatcttccatga |
19100578 |
T |
|
| Q |
244 |
ttcccaaaataaccctcaaactcaaaattacaattt |
279 |
Q |
| |
|
|||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
19100579 |
ttcccaaattaaccctcaaacccaaaactacaattt |
19100614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 281
Target Start/End: Complemental strand, 15620162 - 15619909
Alignment:
| Q |
28 |
tattaagctgtctgatgaaacttgagaagttattatggttaaagtatcgagacaacaaatctttttcaaaatcttctttattccaaacaataaaactttt |
127 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| || ||||||||| || ||||||||||| |||||||| || |||||||||||| |||||| | |
|
|
| T |
15620162 |
tattaagctgcctgatgaaatttgagaagttattttgcttaaagtatttaggcaacaaatcttcaccaaaatctactggattccaaacaatgaaacttct |
15620063 |
T |
|
| Q |
128 |
atcagtagcaccccaagaaacaatggcatctgttgaaggatcttcaaccatattataagtcttggtgagaaaaggaggcaccttatcggaactactaccc |
227 |
Q |
| |
|
|| || |||| ||||||||||||| ||| ||| |||||| ||||| | ||||||||| | |||||||||||||| | || | || |||||| |
|
|
| T |
15620062 |
attggtggcactccaagaaacaatgacattagttaaaggataatcaactttgccataagtcttactaagaaaaggaggcacatgattgaaatgactacct |
15619963 |
T |
|
| Q |
228 |
tgagcttcttccatcattcccaaaataaccctcaaactcaaaattacaattttc |
281 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
15619962 |
tgagccacttccatcattttcaaaataaccctcaaacccaaatctacaattttc |
15619909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 20681413 - 20681341
Alignment:
| Q |
221 |
actaccctgagcttcttccatcattcccaaaataaccctcaaactcaaaattacaattttcagtacacaatga |
293 |
Q |
| |
|
|||||| ||| | |||||||||||||| ||||||||||||| || ||||| || |||||||| |||||||||| |
|
|
| T |
20681413 |
actaccatgaccatcttccatcattccaaaaataaccctcacacccaaaactaaaattttcaatacacaatga |
20681341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 20681596 - 20681554
Alignment:
| Q |
36 |
tgtctgatgaaacttgagaagttattatggttaaagtatcgag |
78 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
20681596 |
tgtctgttgaaacttgagaagttattatgcttaaaatatcgag |
20681554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University