View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_high_22 (Length: 291)
Name: NF3434_high_22
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 33127152 - 33127428
Alignment:
| Q |
1 |
aaggtaaagtggtggtagtttctttttgaggggaaagcatggtgtgtataaacactttcacctccattggttgttcctgaaaagagctaaaccaccaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127152 |
aaggtaaagtggtggtagtttctttttgaggggaaagcatggtgtgtataaacactttcacctccattggttgttcctgaaaagagctaaaccaccaaaa |
33127251 |
T |
|
| Q |
101 |
ctacatatatcaataagtaagtttggattacaagcataaactttgaaccatgttccacaccaaagacatgcataaaggagtctaag-nnnnnnnnnnnnn |
199 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127252 |
ctacatatatcaataagcaagtttggattacaagcataaattttgaaccatgttccacaccaaagacatgcataaaggagtctaagaaaaagaaagaaaa |
33127351 |
T |
|
| Q |
200 |
nnngttcaatttaattatttaatttaggttaacatgtctacaagtgagatcacgaaaatggaagaaggtgatcttaa |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127352 |
aaagttcaatttaattatttaatttaggttaacatgtctacaagtgagatcacgaaaatggaagaaggtgatcttaa |
33127428 |
T |
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