View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_high_23 (Length: 281)
Name: NF3434_high_23
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 36552305 - 36552043
Alignment:
| Q |
1 |
taaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacatacacaaactatttaaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36552305 |
taaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacatacacaaactatttaaaatg |
36552206 |
T |
|
| Q |
101 |
cctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggagattttttaacatttgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36552205 |
cctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggagattttttaacatttgatg |
36552106 |
T |
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| Q |
201 |
aatgtatattttgtgtctttgattttctttatgaagattacaaaaaagatatattagaataat |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36552105 |
aatgtatattttgtgtctttgattttctttatgaagattacaaaaaagatatattagaataat |
36552043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 36559840 - 36560102
Alignment:
| Q |
1 |
taaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacatacacaaactatttaaaatg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36559840 |
taaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacatacacaaactatttaaaatg |
36559939 |
T |
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| Q |
101 |
cctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggagattttttaacatttgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36559940 |
cctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggagattttttaacatttgatg |
36560039 |
T |
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| Q |
201 |
aatgtatattttgtgtctttgattttctttatgaagattacaaaaaagatatattagaataat |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36560040 |
aatgtatattttgtgtctttgattttctttatgaagattacaaaaaagatatattagaataat |
36560102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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