View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3434_high_33 (Length: 242)

Name: NF3434_high_33
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3434_high_33
NF3434_high_33
[»] chr3 (8 HSPs)
chr3 (1-222)||(24919755-24919975)
chr3 (117-227)||(24982134-24982244)
chr3 (69-227)||(25085126-25085280)
chr3 (114-227)||(24497240-24497353)
chr3 (49-222)||(24923378-24923549)
chr3 (110-222)||(31825534-31825646)
chr3 (118-225)||(21584582-21584689)
chr3 (118-155)||(14858633-14858670)
[»] chr7 (2 HSPs)
chr7 (121-225)||(10575477-10575581)
chr7 (126-225)||(39954838-39954937)
[»] chr2 (1 HSPs)
chr2 (149-225)||(41027662-41027738)
[»] chr8 (1 HSPs)
chr8 (118-225)||(14261017-14261124)
[»] chr4 (2 HSPs)
chr4 (143-219)||(22898649-22898725)
chr4 (143-219)||(22950317-22950393)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 24919755 - 24919975
Alignment:
Q  1 ttataacatattaccctaaacatcattgaaactttctatggtgcaattgcatattcaaattaaagtcttaaggcaaaagaaaataaaaa-taaactaaag 99  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||     
T  24919755 ttataacatattaccctaaacatcattgaaactttctaaggtgcaattgcatattcaaattaaagtct-aaggcaaaataaaataaaaaataaactaaa- 24919852  T
Q  100 agtgcttctacttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttc 199  Q
    ||||||||| |||| | |||  | |||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| || || ||||||    
T  24919853 agtgcttcttcttcatcttcagcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttc 24919952  T
Q  200 ctcctagcgtgctcagtgtatgt 222  Q
    |||||||||||||||||||||||    
T  24919953 ctcctagcgtgctcagtgtatgt 24919975  T

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Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 24982244 - 24982134
Alignment:
Q  117 ttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982244 ttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagt 24982145  T
Q  217 gtatgtaactg 227  Q
    |||||||||||    
T  24982144 gtatgtaactg 24982134  T

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Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 69 - 227
Target Start/End: Complemental strand, 25085280 - 25085126
Alignment:
Q  69 taaggcaaaagaaaataa-aaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaag 167  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||      |||||||||||| || |||||||||||||||||||| |||||||||||||    
T  25085280 taaggcaaaagaaaataacaaataaactaaagagtgtttcttctg-----tcttcttcaacctccaaaaccatagagggttcttccctgtctcttcaaag 25085186  T
Q  168 catagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactg 227  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  25085185 catagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactg 25085126  T

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Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 24497240 - 24497353
Alignment:
Q  114 tttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctc 213  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  24497240 tttttcttcatcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctc 24497339  T
Q  214 agtgtatgtaactg 227  Q
    ||||||||||||||    
T  24497340 agtgtatgtaactg 24497353  T

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Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 222
Target Start/End: Original strand, 24923378 - 24923549
Alignment:
Q  49 gcatattcaaatta-aagtcttaaggcaaaagaaaataaaaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggt 147  Q
    |||||||||||||| ||  || |||| |||||| || ||||||||||||||||||| |||| |||| | ||||||   |||| || || |||||||||||    
T  24923378 gcatattcaaattacaaagctaaaggaaaaagataaaaaaaataaactaaagagtgtttcttcttcatattcttc---aacctccaaatccatagagggt 24923474  T
Q  148 tcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgt 222  Q
    |||||| |||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||||||||||    
T  24923475 tcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgt 24923549  T

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Target: chr3; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 31825534 - 31825646
Alignment:
Q  110 cttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgt 209  Q
    |||||| |||||| |||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  31825534 cttcttcttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgt 31825633  T
Q  210 gctcagtgtatgt 222  Q
    |||||||||||||    
T  31825634 gctcagtgtatgt 31825646  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 21584582 - 21584689
Alignment:
Q  118 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 217  Q
    |||||||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||| || |||||||||    
T  21584582 tcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtg 21584681  T
Q  218 tatgtaac 225  Q
    || |||||    
T  21584682 tacgtaac 21584689  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 14858633 - 14858670
Alignment:
Q  118 tcttcttcaaccaccgaaaccatagagggttcttcctt 155  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  14858633 tcttcttcaaccaccaaaaccgtagagggttcttcctt 14858670  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 10575581 - 10575477
Alignment:
Q  121 tcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtat 220  Q
    |||||||||||||||||||||||||||||||||||||||||| |  || || ||||||||||| || || ||||| |||||||| || |||||||||||     
T  10575581 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaa 10575482  T
Q  221 gtaac 225  Q
    |||||    
T  10575481 gtaac 10575477  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 39954838 - 39954937
Alignment:
Q  126 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac 225  Q
    ||||||||||||| ||||| || ||||| || ||||| | |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 41027738 - 41027662
Alignment:
Q  149 cttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac 225  Q
    ||||||||||||||||| ||||| ||||||||||| || ||||||||||| |||||||||||||| ||||| |||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaac 41027662  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 14261017 - 14261124
Alignment:
Q  118 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 217  Q
    |||||||||||| ||||||||||| |  || ||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || || |||||     
T  14261017 tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta 14261116  T
Q  218 tatgtaac 225  Q
    || |||||    
T  14261117 tacgtaac 14261124  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 22898725 - 22898649
Alignment:
Q  143 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgta 219  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| |||||||||||||||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgta 22898649  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 22950393 - 22950317
Alignment:
Q  143 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgta 219  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| |||||||||||||||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgta 22950317  T

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