View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3434_high_34 (Length: 239)

Name: NF3434_high_34
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3434_high_34
NF3434_high_34
[»] chr5 (3 HSPs)
chr5 (18-239)||(42516541-42516759)
chr5 (18-239)||(42523193-42523411)
chr5 (18-221)||(42507037-42507238)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 42516759 - 42516541
Alignment:
Q  18 acataaaatagtgacaaaaggataaaagaaacaaaccagaaatctcccttatacgatgatgaatggaggaagtaatacaaagtgtaaggagaaagagagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||   ||||||||||||||||||||||||||||||||||||||    
T  42516759 acataaaatagtgacaaaaggataaaagaaacaaaccagaaatctgccttatgcgatga---atggaggaagtaatacaaagtgtaaggagaaagagagt 42516663  T
Q  118 gataaagccaaggatggattttgacgccataggagagaattgagagtaagtaaggtttgtgtgatatttgtggagaaaaagaataaagcgatgcacaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42516662 gataaagccaaggatggattttgacgccataggagagaattgagagtaagtaaggtttgtgtgatatttgtggagaaaaagaataaagcgatgcacaaat 42516563  T
Q  218 atatcgattttttattgaagtt 239  Q
    ||||||| |||| |||||||||    
T  42516562 atatcgaattttgattgaagtt 42516541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 42523411 - 42523193
Alignment:
Q  18 acataaaatagtgacaaaaggataaaagaaacaaaccagaaatctcccttatacgatgatgaatggaggaagtaatacaaagtgtaaggagaaagagagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||   ||||||||||||||||||||||||||||||||||||||    
T  42523411 acataaaatagtgacaaaaggataaaagaaacaaaccagaagtctgccttatgcgatga---atggaggaagtaatacaaagtgtaaggagaaagagagt 42523315  T
Q  118 gataaagccaaggatggattttgacgccataggagagaattgagagtaagtaaggtttgtgtgatatttgtggagaaaaagaataaagcgatgcacaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42523314 gataaagccaaggatggattttgacgccataggagagaattgagagtaagtaaggtttgtgcgatatttgtggagaaaaagaataaagcgatgcacaaat 42523215  T
Q  218 atatcgattttttattgaagtt 239  Q
    |||||||||||| |||||||||    
T  42523214 atatcgatttttgattgaagtt 42523193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 42507238 - 42507037
Alignment:
Q  18 acataaaatagtgacaaaaggataaaagaaacaaaccagaaatctcccttatacgatgatgaatggaggaagtaatacaaagtgtaaggagaaagagagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||   ||||||||||||||||||||||||||||||||||||||    
T  42507238 acataaaatagtgacaaaaggataaaagaaacaaaccagaagtctgccttatgcgatga---atggaggaagtaatacaaagtgtaaggagaaagagagt 42507142  T
Q  118 gataaagccaaggatggattttgacgccataggagag--aattgagagtaagtaaggtttgtgtgatatttgtggagaaaaagaataaagcgatgcacaa 215  Q
    ||||||||||||||||||||||||||||||| |||||  |||||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||||||    
T  42507141 gataaagccaaggatggattttgacgccatacgagagaaaattgaaagtaagt-aggtttttgtgatatttgtggagaaaaagaataatgcgatgcacaa 42507043  T
Q  216 atatat 221  Q
    ||||||    
T  42507042 atatat 42507037  T

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