View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3434_high_35 (Length: 239)
Name: NF3434_high_35
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_high_35 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 42447797 - 42448008
Alignment:
| Q |
11 |
cagagattttcatagataatgttagagagaactgaattttgttctatgatggatttgggagtttttactttttgctatctcattgatatagtacaatatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42447797 |
cagagattttcatagataatgttagagagaactgaattttgttctatgatggatttgggagtttttactttttgctatctcattgatatagtacaatatc |
42447896 |
T |
|
| Q |
111 |
atcgttttgaaaccctccttttgattgaacgaaacctcctaaatcatgtggtttaattttaaattgttcatttgatcactatagaaaagttggactaaga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42447897 |
atcgttttgaaaccctccttttgattgaaagaaacctcctaaatcatgtggtttaattttaaattgttcatttgatcactatagaaaagttggactaaga |
42447996 |
T |
|
| Q |
211 |
aagaatatagat |
222 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42447997 |
aagaatatagat |
42448008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 7802068 - 7801995
Alignment:
| Q |
71 |
gtttttactttttgctatctcattgatatagtacaatatcatcgttttgaaaccctccttttgattgaacgaaa |
144 |
Q |
| |
|
|||||| |||||||||||||||||||| | || ||||| || |||||||||||||| |||||| |||| |||| |
|
|
| T |
7802068 |
gtttttcctttttgctatctcattgatgttgtcaaatatgattgttttgaaaccctctttttgactgaatgaaa |
7801995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 39116002 - 39116088
Alignment:
| Q |
129 |
ttttgattgaacgaaacctcctaaatcatgtggtttaattttaaat-tgttcatttgatcactatagaaaagttggactaagaaaga |
214 |
Q |
| |
|
|||||| |||| ||||||| |||||||||||| ||||||||| | | ||||||||||| |||||| ||||||| || ||||||||| |
|
|
| T |
39116002 |
ttttgaatgaatgaaaccttctaaatcatgtgatttaattttgattcggttcatttgattactatacaaaagtttgagtaagaaaga |
39116088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University