View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3434_high_37 (Length: 237)

Name: NF3434_high_37
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3434_high_37
NF3434_high_37
[»] chr5 (14 HSPs)
chr5 (1-223)||(41369945-41370167)
chr5 (1-223)||(41325171-41325393)
chr5 (4-223)||(41317110-41317329)
chr5 (4-222)||(41333084-41333302)
chr5 (2-217)||(31177513-31177728)
chr5 (1-200)||(41287273-41287472)
chr5 (1-162)||(41311312-41311473)
chr5 (1-208)||(31187585-31187792)
chr5 (1-217)||(41367260-41367476)
chr5 (1-208)||(31225986-31226193)
chr5 (4-122)||(41329151-41329269)
chr5 (5-153)||(41337892-41338040)
chr5 (1-114)||(41305419-41305532)
chr5 (83-132)||(41329543-41329592)
[»] chr4 (1 HSPs)
chr4 (1-163)||(17248447-17248609)
[»] chr3 (1 HSPs)
chr3 (92-148)||(22941642-22941698)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41369945 - 41370167
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41369945 atacataccatttgatgcagggaggaggatgtgtccaggcattatgtttggcttacctaacgttgagttgcctcttgctagtttactttaccactttgat 41370044  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctatta 200  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  41370045 tggaagcttcccaatgaaatgaagaatgaagaattggatatgactgaatcatttgggattacagcagtaagaaaatatgatttatgcttgattcctatta 41370144  T
Q  201 ttcgtcgtatttgatatgtattg 223  Q
    |||||||||||||||||||||||    
T  41370145 ttcgtcgtatttgatatgtattg 41370167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41325171 - 41325393
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    |||||||||||||||||| || || ||||||||||| || |||   |||| | |||| |||||||| |||||||||||||||||||||||||||||||||    
T  41325171 atacataccatttggtgctggaagaaggatgtgtcccggaattgcatttgccttacccaacgttgaattgcctcttgctagtttactttaccactttgat 41325270  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctatta 200  Q
    ||||||||| ||||| ||||||||||||||||  | |||||||| || ||||| |||||||| ||||  |||||  |   | ||||||| ||||||||||    
T  41325271 tggaagcttcccaataaaatgaagaatgaagaactagatatgaccgagtcatttgggattactgcaggtagaaagcacaatctatgcttaattcctatta 41325370  T
Q  201 ttcgtcgtatttgatatgtattg 223  Q
     ||||||| ||| ||||||||||    
T  41325371 ctcgtcgtctttaatatgtattg 41325393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 41317110 - 41317329
Alignment:
Q  4 cataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattgg 103  Q
    ||||||||||||||| || ||||||||||||||||| |||   |||| | | || || |||||| ||||||||||||  |||||||| ||||||||||||    
T  41317110 cataccatttggtgctggaaggaggatgtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttgctaagttactttatcactttgattgg 41317209  T
Q  104 aagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctattattc 203  Q
    |||||| |||||| ||||||||||||||| |||||||||||||| ||||| |||||||| ||||  |||||| | | | ||||||| ||||||||   ||    
T  41317210 aagcttcccaatggaatgaagaatgaagaattggatatgactgagtcatttgggattactgcaggtagaaaacacgatctatgcttaattcctatccctc 41317309  T
Q  204 gtcgtatttgatatgtattg 223  Q
    ||||| ||| ||||||||||    
T  41317310 gtcgtttttaatatgtattg 41317329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 41333084 - 41333302
Alignment:
Q  4 cataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattgg 103  Q
    ||||||||||||||| || |||||||||||||| || |||   |||| |||||| ||| ||||| | |||||||||   ||||||| |||||||||||||    
T  41333084 cataccatttggtgctggaaggaggatgtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctcaattactttgccactttgattgg 41333183  T
Q  104 aagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctattattc 203  Q
    |||||| ||||| ||||||||||||||||  | |||||||| || ||||| |||||||| | || ||||||  | | | |||| || |||||||||| ||    
T  41333184 aagcttcccaataaaatgaagaatgaagaactagatatgaccgagtcatttgggattactgtaggaagaaagcacgatctatgtttaattcctattactc 41333283  T
Q  204 gtcgtatttgatatgtatt 222  Q
    ||||| ||| |||||||||    
T  41333284 gtcgtctttaatatgtatt 41333302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 31177728 - 31177513
Alignment:
Q  2 tacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgatt 101  Q
    |||||||| || ||||| || || || ||||||||||||||    |||||| || | ||| ||||| |||||||||||   |||||||||||||||||||    
T  31177728 tacataccgttcggtgctggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgatt 31177629  T
Q  102 ggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctattat 201  Q
    |||||||| | |||| |||||||||||||||  | ||||||||||| ||||| ||| || | | |||||||||| |||   |||||||||||||||| |     
T  31177628 ggaagcttcctaatggaatgaagaatgaagaactagatatgactgagtcatttgggcttgctgtagtaagaaaacatgacctatgcttgattcctataac 31177529  T
Q  202 tcgtcgtatttgatat 217  Q
    ||||||| ||| ||||    
T  31177528 tcgtcgtctttaatat 31177513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 41287273 - 41287472
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    |||||||||||||||||| || ||||||||||| |||||||||   || ||| |||| ||||||||| | |||||||||   |||||||| |||||||||    
T  41287273 atacataccatttggtgctggaaggaggatgtgcccaggcattgccttcggcatacccaacgttgagcttcctcttgctgaattactttatcactttgat 41287372  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctatta 200  Q
    |||||||||  ||||| |||||||  ||||||  | ||||||||||| ||||| |||||||| | || ||||||| |||   |||| || ||||||||||    
T  41287373 tggaagcttctcaatggaatgaagtgtgaagaacttgatatgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctatta 41287472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 41311312 - 41311473
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    |||||||||||||||||| || |||||||||||||| || |||   |||| |||||| ||| ||||| | |||||||||   ||||||||||  ||||||    
T  41311312 atacataccatttggtgctggaaggaggatgtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctcaattactttaccggtttgat 41311411  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattac 162  Q
    ||||||||| ||||| ||||||||||||||||  | |||||| |||| ||||| ||||||||    
T  41311412 tggaagcttcccaataaaatgaagaatgaagaactagatatggctgagtcatttgggattac 41311473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 31187792 - 31187585
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    ||||||||| || ||||| || || || ||||||||||||||    |||||| || | ||| ||||| |||||||||||   ||||||||||||||||||    
T  31187792 atacataccgttcggtgctggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgat 31187693  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctatta 200  Q
    ||||||||| | |||| |||||||||||||||  | ||||||||||| ||||| |||||  |   || ||||||| |||   ||||||||||||||||||    
T  31187692 tggaagcttcctaatggaatgaagaatgaagaactagatatgactgagtcatttgggatggctataggaagaaaacatgacctatgcttgattcctatta 31187593  T
Q  201 ttcgtcgt 208  Q
     |||||||    
T  31187592 ctcgtcgt 31187585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 41367260 - 41367476
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    |||||||||||||||||| || |||||||||||||  || |||   |||| | |||| ||| | ||| | ||| | |||   ||||||||||| ||||||    
T  41367260 atacataccatttggtgctggaaggaggatgtgtctgggtattgcatttgccttacccaacatagagctacctttagctcagttactttaccattttgat 41367359  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctatta 200  Q
    ||||||||| | |||| ||||||||||||||| || |||||||| || ||||| ||| || ||| || ||||||| |||  ||||||||||||||| | |    
T  41367360 tggaagcttccaaatggaatgaagaatgaagaattagatatgacggagtcatttgggcttgcagtaggaagaaaacatgacttatgcttgattcctttca 41367459  T
Q  201 ttcgtcgtatttgatat 217  Q
    ||||||||  |||||||    
T  41367460 ttcgtcgtccttgatat 41367476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 31225986 - 31226193
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    ||||||||| || ||||| || || || ||||||||||||||    |||||| || | ||| ||||| |||||||||||   ||||||||||||||||||    
T  31225986 atacataccgttcggtgctggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgat 31226085  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctatta 200  Q
    ||||||||| | |||| |||||||||||||||  | ||||||||||| ||||| ||| || | | || ||||||| |||   | |||||||||||||| |    
T  31226086 tggaagcttcctaatggaatgaagaatgaagaactagatatgactgagtcatttgggctttctgtaggaagaaaaaatgacctgtgcttgattcctatca 31226185  T
Q  201 ttcgtcgt 208  Q
     |||||||    
T  31226186 ctcgtcgt 31226193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 41329151 - 41329269
Alignment:
Q  4 cataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattgg 103  Q
    ||||||||||||||| || || |||||||||||||| |||   |||| | |||| || |||||| ||||||||||||  |||||||| ||||||||||||    
T  41329151 cataccatttggtgctggaagaaggatgtgtccaggtatttcatttgccatacccaatgttgagctgcctcttgctaagttactttatcactttgattgg 41329250  T
Q  104 aagctttccaatgaaatga 122  Q
    |||||| |||||| |||||    
T  41329251 aagcttcccaatggaatga 41329269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 41337892 - 41338040
Alignment:
Q  5 ataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattgga 104  Q
    |||||||||||||| || || |||||||||||||| |||   |||| | | || || |||||| ||||||||||||  || ||||| |||||||||||||    
T  41337892 ataccatttggtgctggaagaaggatgtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttgctaagttgctttatcactttgattgga 41337991  T
Q  105 agctttccaatgaaatgaagaatgaagagttggatatgactgaatcatt 153  Q
    | ||| | |||| |||||   || ||||  | |||||||||||||||||    
T  41337992 aacttccaaatggaatgagccatcaagaacttgatatgactgaatcatt 41338040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 41305419 - 41305532
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    |||||||||||||||||| || |||||||||||||| ||||||   |||| | || | || |||||  | |||||||||   ||||||||  ||||||||    
T  41305419 atacataccatttggtgctggaaggaggatgtgtccgggcattgcatttgccttatcaaatgttgaacttcctcttgctgaattactttataactttgat 41305518  T
Q  101 tggaagctttccaa 114  Q
    ||||||||| ||||    
T  41305519 tggaagcttcccaa 41305532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 41329543 - 41329592
Alignment:
Q  83 ttactttaccactttgattggaagctttccaatgaaatgaagaatgaaga 132  Q
    ||||||||  |||||||||| ||||||||||||| |||||| ||||||||    
T  41329543 ttactttatgactttgattgaaagctttccaatggaatgaataatgaaga 41329592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 17248609 - 17248447
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    |||||||||||||||||| || |||||||| ||||| ||||||   |||||| |||| ||| |||||||||||||||||   ||||||||||| ||||||    
T  17248609 atacataccatttggtgctggaaggaggatttgtccgggcattgcatttggcatacccaacattgagttgcctcttgctcaattactttaccattttgat 17248510  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattaca 163  Q
    ||||||||| ||||||||||||||||||||||  | |||||||| || ||||| |||||||||    
T  17248509 tggaagcttcccaatgaaatgaagaatgaagatctagatatgaccgagtcatttgggattaca 17248447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 22941642 - 22941698
Alignment:
Q  92 cactttgattggaagctttccaatgaaatgaagaatgaagagttggatatgactgaa 148  Q
    |||||||||||||| ||| ||||||| ||||| |||||||| ||||| |||| ||||    
T  22941642 cactttgattggaaacttcccaatgagatgaaaaatgaagatttggacatgagtgaa 22941698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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