View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3434_high_40 (Length: 231)
Name: NF3434_high_40
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_high_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 20433475 - 20433263
Alignment:
| Q |
1 |
taaatctatcaattgcatgcatagatggaaattgttaaaaacaattacgacgaataatacaatgaaggaattcatatcttacatgctgacattaatggga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
20433475 |
taaatctatcaattgcatgcatagatggaaacggttaaaaacaattacgacgaataatacaatgaaggaattcatatcatacatgctgacaataatggga |
20433376 |
T |
|
| Q |
101 |
aaaatcaacgatggagaaggttgagggaataagccgcgtcattgagcaagagagaattagtcagaaacatctatagagggcgtcattgagtaaggtatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
20433375 |
aaaatcaacgatggagaaggttgagggaataagctgcgtcattgagcaagagagaattagtcggaaacatttctagagggtgtcattgagtaaggtatga |
20433276 |
T |
|
| Q |
201 |
aatccctatgact |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
20433275 |
aatccctatgact |
20433263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 20433091 - 20433268
Alignment:
| Q |
8 |
atcaattgcatgcatagatggaaattgttaaaaacaattacgacgaataatacaatgaaggaattcatatcttacatgctgacattaatgggaaaaatca |
107 |
Q |
| |
|
||||| |||||||||||||| ||| |||||||||| ||||||||| ||| |||||||| || |||||||||||||| | ||| |||| |||||||| |
|
|
| T |
20433091 |
atcaaatgcatgcatagatgaaaaatgttaaaaacggttacgacgattaacacaatgaatgatttcatatcttacattcaaacaataatcggaaaaattg |
20433190 |
T |
|
| Q |
108 |
acgatggagaaggttgagggaataagccgcgtcattgagcaagagagaattagtcagaaacatctatagagggcgtcat |
186 |
Q |
| |
|
|||| ||||||||||| ||||| ||| ||| || || ||||||||||||||| |||||| | ||||||| ||||| |
|
|
| T |
20433191 |
gcgat-gagaaggttgacagaatacaccgtgtcgtttagtaagagagaattagtcggaaacaagtctagagggagtcat |
20433268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 9979983 - 9980020
Alignment:
| Q |
93 |
taatgggaaaaatcaacgatggagaaggttgagggaat |
130 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
9979983 |
taatgggaaaaatcagcgatggagaaggttgagagaat |
9980020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 17344533 - 17344713
Alignment:
| Q |
1 |
taaatctatcaattgcatgcatagatggaaattgttaaaaacaattacgacgaataatacaatgaaggaattcatatcttacatgctgacattaatggga |
100 |
Q |
| |
|
|||||||||||| ||||| |||||| ||| |||||||||||||| |||| ||||| | |||||||||| |||||||||||||||| | | |||| || |
|
|
| T |
17344533 |
taaatctatcaaatgcatcaatagatagaagatgttaaaaacaatttcgacaaataacataatgaaggaactcatatcttacatgctaaaaataat-ggc |
17344631 |
T |
|
| Q |
101 |
aaaatcaacgatggagaaggttgagggaataagccgcgtcattgagcaagagagaattagtcagaaacatctatagagggcg |
182 |
Q |
| |
|
||||| | | |||||||||||| ||||| | |||||| |||| |||||||| ||| ||||||||| ||||||| |||| |
|
|
| T |
17344632 |
aaaattagtatttgagaaggttgagagaatacgtcgcgtcgttgactaagagagagttactcagaaacaactatagaaggcg |
17344713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 17344227 - 17344126
Alignment:
| Q |
3 |
aatctatcaattgcatgcatagatggaaattgttaaaaacaattacgacgaataatacaatgaaggaattcatatcttacatgctgacattaatgggaaa |
102 |
Q |
| |
|
||||||| || |||||||||| ||||||| || |||||||||||||| ||||| | ||||||| |||| | ||||| |||||| ||| |||||||||| |
|
|
| T |
17344227 |
aatctattaaatgcatgcataaatggaaaaagtcaaaaacaattacgaaaaataacaaaatgaagaaatttacatcttgcatgctaacactaatgggaaa |
17344128 |
T |
|
| Q |
103 |
aa |
104 |
Q |
| |
|
|| |
|
|
| T |
17344127 |
aa |
17344126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University