View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3434_high_43 (Length: 227)
Name: NF3434_high_43
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_high_43 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0669 (1 HSPs) |
| | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 15857362 - 15857142
Alignment:
| Q |
7 |
ttaaataggtctctctctttgctccttcaatcatttagtttagattttgatgatgttttattaaaatgatattttatgtttctttgctcttgttaaaata |
106 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15857362 |
ttaaataggtctctctcgttgctccttcaatcatttagtttagattttgatgatgttttattaaaatgatattttatgtttctttgcttttgttaaaata |
15857263 |
T |
|
| Q |
107 |
gcttaattgtgaaagcacctaattcaattcaagatctcaggtcacctacaatattgtcctttgttgacaagtgtttatattgagtttggaaatttcttag |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
15857262 |
gattaattgtgaaagcacctaattcaattcaagatctcaggtcacctacaatattgtcctttgttgacaagtgtttgtattgagtttggaaatttctttg |
15857163 |
T |
|
| Q |
207 |
gagtcaagaattttcaaaatc |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
15857162 |
gagtcaagaattttcaaaatc |
15857142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0669 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0669
Description:
Target: scaffold0669; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 4369 - 4270
Alignment:
| Q |
25 |
ttgctccttcaatcatttagtttagattttgatgatgtttt-attaaaatgatattttatgtttctttgctcttgttaaaatagcttaattgtgaaagca |
123 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| || | ||||| ||||||||||||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
4369 |
ttgctccttcaatcatttagttttagttttgatgatgtttttatgtagatgatgttttatgtttctttgctcttgttcaattagtttaattgtgaaagca |
4270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 13257301 - 13257154
Alignment:
| Q |
25 |
ttgctccttcaatcatttagtttagattttgatgatgtttt-attaaaatgatattttatgtttctttgctcttgttaaaatagcttaattgtgaaagca |
123 |
Q |
| |
|
||||||||| |||| |||||||||| ||||| ||||||||| ||| | ||| | |||||||||||||||| ||||| || ||||| ||||||||||||| |
|
|
| T |
13257301 |
ttgctcctttaatcttttagtttaggttttggtgatgtttttatttagatgttgttttatgtttctttgcctttgtttaattagctcaattgtgaaagca |
13257202 |
T |
|
| Q |
124 |
cctaattcaattcaagatctcaggtcacctacaatattgtcctttgtt |
171 |
Q |
| |
|
|| | | ||| || ||| ||||||| |||||||| |||||| |||| |
|
|
| T |
13257201 |
ccctagttaatccatgatttcaggtcctctacaatagtgtcctgtgtt |
13257154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 54063 - 53963
Alignment:
| Q |
25 |
ttgctccttcaatcatttagtttagattttgatgatg-ttttattaaaatgatattttatg-tttctttgctcttgttaaaatagcttaattgtgaaagc |
122 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||||||| ||||| ||| ||||| |||| || |||| |||||| |||||||||||||||||||||||| |
|
|
| T |
54063 |
ttgctccttcaattatttggtttaggttttgatgatgtttttaataagatgatgttttgtgttttccttgctc--cttaaaatagcttaattgtgaaagc |
53966 |
T |
|
| Q |
123 |
acc |
125 |
Q |
| |
|
||| |
|
|
| T |
53965 |
acc |
53963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 4006139 - 4006181
Alignment:
| Q |
25 |
ttgctccttcaatcatttagtttagattttgatgatgttttat |
67 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4006139 |
ttgcttcttcaatcatttagtttaggttttgatgatgttttat |
4006181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 4011531 - 4011573
Alignment:
| Q |
25 |
ttgctccttcaatcatttagtttagattttgatgatgttttat |
67 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4011531 |
ttgcttcttcaatcatttagtttaggttttgatgatgttttat |
4011573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University